Abstract
HBV replicates through reverse transcription of an RNA intermediate; the inherent lack of proofreading causes a high mutation frequency. Mutations in the precore and core promoter regions that abolish or reduce the production of hepatitis B e antigen occur most commonly. Patients with these HBV variants remain viremic and can develop progressive liver disease. Mutations in the core promoter region are associated with an increased risk of hepatocellular carcinoma. Exogenous selection pressure might favor certain mutations. Mutations in the HBV polymerase that confer resistance to nucleoside and nucleotide analog treatments are a major barrier to the success of therapy for hepatitis B. The development of antiviral drug resistance negates the initial treatment response and can lead to hepatitis flares and hepatic decompensation. Prompt addition of another drug to which the virus is not cross-resistant is required. Mutations in the HBV surface protein that facilitate escape from host immunity are responsible for the failure of immune prophylaxis in infants who received HBV vaccine and in liver transplant recipients who received hepatitis B immune globulin.
Key Points
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Mutations in the precore and core promoter regions are the most common naturally occurring mutations in HBV
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Mutations in the core promoter, which are most commonly associated with HBV genotype C, are associated with an increased risk of hepatocellular carcinoma
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Selection for mutations in the reverse transcriptase region of the HBV polymerase is a major barrier to the success of nucleoside or nucleotide analog treatment of hepatitis B
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Antiviral drug resistance initially manifests as virologic breakthrough and might be followed by biochemical breakthrough, hepatitis flare and hepatic decompensation
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Antiviral treatment should be initiated with nucleoside or nucleotide analogs that have high genetic barriers to resistance
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Immune-escape HBV surface mutations are responsible for the failure of immune prophylaxis in infants who received HBV vaccine and in liver transplant recipients who received hepatitis B immune globulin
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References
Summers, J. & Mason, W. S. Replication of the genome of a hepatitis B--like virus by reverse transcription of an RNA intermediate. Cell 29, 403–415 (1982).
Nowak, M. A. et al. Viral dynamics in hepatitis B virus infection. Proc. Natl Acad. Sci. USA 93, 4398–4402 (1996).
Girones, R. & Miller, R. H. Mutation rate of the hepadnavirus genome. Virology 170, 595–597 (1989).
Locarnini, S. Molecular virology and the development of resistant mutants: implications for therapy. Semin. Liver Dis. 25 (Suppl. 1), 9–19 (2005).
Zhang, Y. Y. & Summers, J. Enrichment of a precore-minus mutant of duck hepatitis B virus in experimental mixed infections. J. Virol. 73, 3616–3622 (1999).
Roossinck, M. J., Jameel, S., Loukin, S. H. & Siddiqui, A. Expression of hepatitis B viral core region in mammalian cells. Mol. Cell Biol. 6, 1393–1400 (1986).
Ou, J. H., Laub, O. & Rutter, W. J. Hepatitis B virus gene function: the precore region targets the core antigen to cellular membranes and causes the secretion of the e antigen. Proc. Natl Acad. Sci. USA 83, 1578–1582 (1986).
Milich, D. R. et al. Is a function of the secreted hepatitis B e antigen to induce immunologic tolerance in utero? Proc. Natl Acad. Sci. USA 87, 6599–6603 (1990).
Carman, W. F. et al. Mutation preventing formation of hepatitis B e antigen in patients with chronic hepatitis B infection. Lancet 2, 588–591 (1989).
Kramvis, A. et al. Relationship of serological subtype, basic core promoter and precore mutations to genotypes/subgenotypes of hepatitis B virus. J. Med. Virol. 80, 27–46 (2008).
Lok, A. S., Akarca, U. & Greene, S. Mutations in the pre-core region of hepatitis B virus serve to enhance the stability of the secondary structure of the pre-genome encapsidation signal. Proc. Natl Acad. Sci. USA 91, 4077–4081 (1994).
Li, J. S. et al. Hepatitis B virus genotype A rarely circulates as an HBe- mutant: possible contribution of a single nucleotide in the precore region. J. Virol. 67, 5402–5410 (1993).
Chu, C. J. et al. Hepatitis B virus genotypes in the United States: results of a nationwide study. Gastroenterology 125, 444–451 (2003).
Chu, C. J. et al. Prevalence of HBV precore/core promoter variants in the United States. Hepatology 38, 619–628 (2003).
Milich, D. & Liang, T. J. Exploring the biological basis of hepatitis B e antigen in hepatitis B virus infection. Hepatology 38, 1075–1086 (2003).
Yang, H. I. et al. Associations between hepatitis B virus genotype and mutants and the risk of hepatocellular carcinoma. J. Natl Cancer Inst. 100, 1134–1143 (2008).
Gunther, S., Piwon, N. & Will, H. Wild-type levels of pregenomic RNA and replication but reduced pre-C RNA and e-antigen synthesis of hepatitis B virus with 1653C>T, 1762A>T and 1764G>A mutations in the core promoter. J. Gen. Virol. 79 (Pt 2), 375–380 (1998).
Parekh, S. et al. Genome replication, virion secretion, and e antigen expression of naturally occurring hepatitis B virus core promoter mutants. J. Virol. 77, 6601–6612 (2003).
Buckwold, V. E., Xu, Z., Chen, M., Yen, T. S. & Ou, J. H. Effects of a naturally occurring mutation in the hepatitis B virus basal core promoter on precore gene expression and viral replication. J. Virol. 70, 5845–5851 (1996).
Chan, H. L., Hussain, M. & Lok, A. S. Different hepatitis B virus genotypes are associated with different mutations in the core promoter and precore regions during hepatitis B e antigen seroconversion. Hepatology 29, 976–984 (1999).
Yuen, M. F. et al. Hepatic necroinflammation and fibrosis in patients with genotypes Ba and C, core-promoter and precore mutations. J. Viral Hepat. 12, 513–518 (2005).
Lin, C. L. et al. Basal core-promoter mutant of hepatitis B virus and progression of liver disease in hepatitis B e antigen-negative chronic hepatitis B. Liver Int. 25, 564–570 (2005).
Sato, S. et al. Hepatitis B virus strains with mutations in the core promoter in patients with fulminant hepatitis. Ann. Intern. Med. 122, 241–248 (1995).
Yuen, M. F. et al. Role of hepatitis B virus genotypes Ba and C, core promoter and precore mutations on hepatocellular carcinoma: a case–control study. Carcinogenesis 25, 1593–1598 (2004).
Kao, J. H., Chen, P. J., Lai, M. Y. & Chen, D. S. Basal core promoter mutations of hepatitis B virus increase the risk of hepatocellular carcinoma in hepatitis B carriers. Gastroenterology 124, 327–334 (2003).
Baptista, M., Kramvis, A. & Kew, M. C. High prevalence of 1762(T) 1764(A) mutations in the basic core promoter of hepatitis B virus isolated from black Africans with hepatocellular carcinoma compared with asymptomatic carriers. Hepatology 29, 946–953 (1999).
Funk, M. L., Rosenberg, D. M. & Lok, A. S. World-wide epidemiology of HBeAg-negative chronic hepatitis B and associated precore and core promoter variants. J. Viral Hepat. 9, 52–61 (2002).
Zarski, J. P. et al. Characteristics of patients with chronic hepatitis B in France: predominant frequency of HBe antigen negative cases. J. Hepatol. 45, 355–360 (2006).
Gaeta, G. B. et al. Epidemiological and clinical burden of chronic hepatitis B virus/hepatitis C virus infection. A multicenter Italian study. J. Hepatol. 39, 1036–1041 (2003).
Hadziyannis, S. J. & Papatheodoridis, G. V. Hepatitis B e antigen-negative chronic hepatitis B: natural history and treatment. Semin. Liver Dis. 26, 130–141 (2006).
Chan, H. L., Leung, N. W., Hussain, M., Wong, M. L. & Lok, A. S. Hepatitis B e antigen-negative chronic hepatitis B in Hong Kong. Hepatology 31, 763–768 (2000).
Manesis, E. K. HBeAg-negative chronic hepatitis B: from obscurity to prominence. J. Hepatol. 45, 343–346 (2006).
Brunetto, M. R. et al. Hepatitis B virus unable to secrete e antigen and response to interferon in chronic hepatitis B. Gastroenterology 105, 845–850 (1993).
Lok, A. S., Akarca, U. S. & Greene, S. Predictive value of precore hepatitis B virus mutations in spontaneous and interferon-induced hepatitis B e antigen clearance. Hepatology 21, 19–24 (1995).
Chu, C. M., Yeh, C. T., Lee, C. S., Sheen, I. S. & Liaw, Y. F. Precore stop mutant in HBeAg-positive patients with chronic hepatitis B: clinical characteristics and correlation with the course of HBeAg-to-anti-HBe seroconversion. J. Clin. Microbiol. 40, 16–21 (2002).
Chen, R. Y. et al. Effect of the G1896A precore mutation on drug sensitivity and replication yield of lamivudine-resistant HBV in vitro. Hepatology 37, 27–35 (2003).
Wu, I. C. et al. Sustained hepatitis B e antigen seroconversion in patients with chronic hepatitis B after adefovir dipivoxil treatment: analysis of precore and basal core promoter mutants. Clin. Infect. Dis. 47, 1305–1311 (2008).
Lok, A. S. et al. Antiviral drug-resistant HBV: standardization of nomenclature and assays and recommendations for management. Hepatology 46, 254–265 (2007).
Allen, M. I. et al. Identification and characterization of mutations in hepatitis B virus resistant to lamivudine. Lamivudine Clinical Investigation Group. Hepatology 27, 1670–1677 (1998).
Seigneres, B. et al. Inhibitory activity of dioxolane purine analogs on wild-type and lamivudine-resistant mutants of hepadnaviruses. Hepatology 36, 710–722 (2002).
Colonno, R. J. et al. Entecavir resistance is rare in nucleoside naive patients with hepatitis B. Hepatology 44, 1656–1665 (2006).
Yuen, M. F. et al. Factors associated with hepatitis B virus DNA breakthrough in patients receiving prolonged lamivudine therapy. Hepatology 34, 785–791 (2001).
Yuen, M. F. et al. Hepatitis B virus DNA levels at week 4 of lamivudine treatment predict the 5-year ideal response. Hepatology 46, 1695–1703 (2007).
Locarnini, S. et al. Incidence and predictors of emergence of adefovir resistant HBV during four years of adefovir dipivoxil (ADV) therapy for patients with chronic hepatitis B (CHB) [Abstract]. J. Hepatol. 42, 17 (2005).
Liaw, Y. F. et al. 2-Year GLOBE trial results: telbivudine Is superior to lamivudine in patients with chronic hepatitis B. Gastroenterology 136, 486–495 (2009).
Keeffe, E. B. et al. Report of an international workshop: roadmap for management of patients receiving oral therapy for chronic hepatitis B. Clin. Gastroenterol. Hepatol. 5, 890–897 (2007).
Pawlotsky, J. M. et al. Virologic monitoring of hepatitis B virus therapy in clinical trials and practice: recommendations for a standardized approach. Gastroenterology 134, 405–415 (2008).
Westland, C. E. et al. Week 48 resistance surveillance in two phase 3 clinical studies of adefovir dipivoxil for chronic hepatitis B. Hepatology 38, 96–103 (2003).
Lai, C. L. et al. Prevalence and clinical correlates of YMDD variants during lamivudine therapy for patients with chronic hepatitis B. Clin. Infect. Dis. 36, 687–696 (2003).
Lok, A. S. et al. Long-term safety of lamivudine treatment in patients with chronic hepatitis B. Gastroenterology 125, 1714–1722 (2003).
Dienstag, J. L. et al. Histological outcome during long-term lamivudine therapy. Gastroenterology 124, 105–117 (2003).
Kim, H. S. et al. Evaluation of methods for monitoring drug resistance in chronic hepatitis B patients during lamivudine therapy based on mass spectrometry and reverse hybridization. Antiviral Ther. 10, 441–449 (2005).
Hussain, M. et al. Sensitive line probe assay that simultaneously detects mutations conveying resistance to lamivudine and adefovir. J. Clin. Microbiol 44, 1094–1097 (2006).
Degertekin, B., Hussain, M., Tan, J., Oberhelman, K. & Lok, A. S. Sensitivity and accuracy of an updated line probe assay (HBV DR v.3) in detecting mutations associated with hepatitis B antiviral resistance. J. Hepatol. 50, 42–48 (2009).
Hirsch, M. S. et al. Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an international AIDS Society USA panel. Clin. Infect. Dis. 47, 266–285 (2008).
Solmone, M. et al. Use of massively parallel ultradeep pyrosequencing to characterize the genetic diversity of hepatitis B virus in drug-resistant and drug-naive patients and to detect minor variants in reverse transcriptase and hepatitis B S antigen. J. Virol. 83, 1718–1726 (2009).
Lee, C. H. et al. Predominance of hepatitis B virus YMDD mutants is prognostic of viral DNA breakthrough. Gastroenterology 130, 1144–1152 (2006).
Ono, S. K. et al. The polymerase L528M mutation cooperates with nucleotide binding-site mutations, increasing hepatitis B virus replication and drug resistance. J. Clin. Invest. 107, 449–455 (2001).
Delaney, W. E. 4th et al. The hepatitis B virus polymerase mutation rtV173L is selected during lamivudine therapy and enhances viral replication in vitro. J. Virol. 77, 11833–11841 (2003).
Angus, P. et al. Resistance to adefovir dipivoxil therapy associated with the selection of a novel mutation in the HBV polymerase. Gastroenterology 125, 292–297 (2003).
Villeneuve, J. P. et al. Selection of a hepatitis B virus strain resistant to adefovir in a liver transplantation patient. J. Hepatol. 39, 1085–1089 (2003).
Zoulim, F. Mechanism of viral persistence and resistance to nucleoside and nucleotide analogs in chronic hepatitis B virus infection. Antiviral Res. 64, 1–15 (2004).
Hadziyannis, S. J. et al. Long-term therapy with adefovir dipivoxil for HBeAg-negative chronic hepatitis B for up to 5 years. Gastroenterology 131, 1743–1751 (2006).
Marcellin, P. et al. Long-term efficacy and safety of adefovir dipivoxil for the treatment of hepatitis B e antigen-positive chronic hepatitis B. Hepatology 48, 750–758 (2008).
Yeon, J. E. et al. Resistance to adefovir dipivoxil in lamivudine resistant chronic hepatitis B patients treated with adefovir dipivoxil. Gut 55, 1488–1495 (2006).
Lampertico, P. et al. Low resistance to adefovir combined with lamivudine: a 3-year study of 145 lamivudine-resistant hepatitis B patients. Gastroenterology 133, 1445–1451 (2007).
Schildgen, O. et al. Variant of hepatitis B virus with primary resistance to adefovir. N. Engl. J. Med. 354, 1807–1812 (2006).
Curtis, M., Zhu, Y. & Borroto-Esoda, K. Hepatitis B virus containing the I233V mutation in the polymerase reverse-transcriptase domain remains sensitive to inhibition by adefovir. J. Infect. Dis. 196, 1483–1486 (2007).
Carrouee-Durantel, S. et al. Suboptimal response to adefovir dipivoxil therapy for chronic hepatitis B in nucleoside-naive patients is not due to pre-existing drug-resistant mutants. Antiviral Ther. 13, 381–388 (2008).
Tenney, D. J. et al. Clinical emergence of entecavir-resistant hepatitis B virus requires additional substitutions in virus already resistant to lamivudine. Antimicrob. Agents Chemother. 48, 3498–3507 (2004).
Tenny, D. J. et al. Entecavir at five years shows long-term maintenance of high genetic barrier to hepatitis B virus resistance. Hepatol. Int. 2, S213–S214 (2008).
Marcellin, P. et al. Tenofovir disoproxil fumarate versus adefovir dipivoxil for chronic hepatitis B. N. Engl. J. Med. 359, 2442–2455 (2008).
Snow-Lampart, A. et al. Week 96 resistance surveillance for HBeAg positive and negative subjects with chronic HBV infection randomized to receive tenofovir DF 300 mg qd [Abstract]. Hepatology 48, 745A (2008).
Sheldon, J. et al. Selection of hepatitis B virus polymerase mutations in HIV-coinfected patients treated with tenofovir. Antiviral Ther. 10, 727–734 (2005).
Delaney, W. E. 4th et al. Intracellular metabolism and in vitro activity of tenofovir against hepatitis B virus. Antimicrob. Agents Chemother. 50, 2471–2477 (2006).
Amini-Bavil-Olyaee, S. et al. The rtA194T polymerase mutation impacts viral replication and susceptibility to tenofovir in hepatitis B e antigen-positive and hepatitis B e antigen-negative hepatitis B virus strains. Hepatology 49, 1158–1165 (2009).
Villet, S., Pichoud, C., Villeneuve, J. P., Trepo, C. & Zoulim, F. Selection of a multiple drug-resistant hepatitis B virus strain in a liver-transplanted patient. Gastroenterology 131, 1253–1261 (2006).
Yim, H. J. et al. Evolution of multi-drug resistant hepatitis B virus during sequential therapy. Hepatology 44, 703–712 (2006).
Lau, G. K. et al. Peginterferon α2a, lamivudine, and the combination for HBeAg-positive chronic hepatitis B. N. Engl. J. Med. 352, 2682–2695 (2005).
Marcellin, P. et al. Peginterferon α-2a alone, lamivudine alone, and the two in combination in patients with HBeAg-negative chronic hepatitis B. N. Engl. J. Med. 351, 1206–1217 (2004).
Sung, J. J. et al. Lamivudine compared with lamivudine and adefovir dipivoxil for the treatment of HBeAg-positive chronic hepatitis B. J. Hepatol. 48, 728–735 (2008).
Marcellin, P. et al. Two year tenofovir disoproxil fumarate (TDF) treatment and adefovir dipivoxil (ADV) switch data in HBeAg-negative patients with chronic hepatitis B (study 102), preliminary analysis. Hepatology 48, 370A–371A (2008).
Heathcote, E. J. et al. Two year tenofovir disoproxil fumarate (TDF) treatment and adefovir dipivoxil (ADV) switch data in HBeAg-positive patients with chronic hepatitis B (study 103), preliminary analysis [Abstract]. Hepatology 48, 376A (2008).
Lampertico, P. et al. Adefovir rapidly suppresses hepatitis B in HBeAg-negative patients developing genotypic resistance to lamivudine. Hepatology 42, 1414–1419 (2005).
Tan, J. et al. Tenofovir monotherapy is effective in hepatitis B patients with antiviral treatment failure to adefovir in the absence of adefovir-resistant mutations. J. Hepatol. 48, 391–398 (2008).
Torresi, J. et al. Reduced antigenicity of the hepatitis B virus HBsAg protein arising as a consequence of sequence changes in the overlapping polymerase gene that are selected by lamivudine therapy. Virology 293, 305–313 (2002).
Warner, N. & Locarnini, S. The antiviral drug selected hepatitis B virus rtA181T/sW172* mutant has a dominant negative secretion defect and alters the typical profile of viral rebound. Hepatology 48, 88–98 (2008).
Pawlotsky, J. M. The concept of hepatitis B virus mutant escape. J. Clin. Virol. 34 (Suppl. 1), S125–S129 (2005).
Chen, W. N. & Oon, C. J. Hepatitis B virus mutants: an overview. J. Gastroenterol. Hepatol. 17 (Suppl.), S497–S499 (2002).
Hsu, H. Y. et al. Surface gene mutants of hepatitis B virus in infants who develop acute or chronic infections despite immunoprophylaxis. Hepatology 26, 786–791 (1997).
Carman, W. F. et al. Vaccine-induced escape mutant of hepatitis B virus. Lancet 336, 325–329 (1990).
Fortuin, M. et al. Breakthrough infections and identification of a viral variant in Gambian children immunized with hepatitis B vaccine. J. Infect. Dis. 169, 1374–1376 (1994).
Hsu, H. Y., Chang, M. H., Ni, Y. H. & Chen, H. L. Survey of hepatitis B surface variant infection in children 15 years after a nationwide vaccination programme in Taiwan. Gut 53, 1499–1503 (2004).
Chang, M. H. et al. Universal hepatitis B vaccination in Taiwan and the incidence of hepatocellular carcinoma in children. Taiwan Childhood Hepatoma Study Group. N. Engl. J. Med. 336, 1855–1859 (1997).
Carman, W. F. et al. Hepatitis B virus envelope variation after transplantation with and without hepatitis B immune globulin prophylaxis. Hepatology 24, 489–493 (1996).
Hawkins, A. E. et al. Hepatitis B virus surface mutations associated with infection after liver transplantation. J. Hepatol. 24, 8–14 (1996).
Ghany, M. G. et al. Hepatitis B virus S mutants in liver transplant recipients who were reinfected despite hepatitis B immune globulin prophylaxis. Hepatology 27, 213–222 (1998).
Samuel, D. et al. Liver transplantation in European patients with the hepatitis B surface antigen. N. Engl. J. Med. 329, 1842–1847 (1993).
Gane, E. J. et al. Lamivudine plus low-dose hepatitis B immunoglobulin to prevent recurrent hepatitis B following liver transplantation. Gastroenterology 132, 931–937 (2007).
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Anna S. F. Lok has carried out consultancy work for Roche, Gilead, Schering-Plough, Bristol-Myers Squibb and Pharmasset, and has received grant or research support from Bristol-Myers Squibb, GlaxoSmithKline, Schering-Plough, Novartis, Gilead, Innogenetics and Nabi. W. Chotiyaputta declares no competing interests.
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Chotiyaputta, W., Lok, A. Hepatitis B virus variants. Nat Rev Gastroenterol Hepatol 6, 453–462 (2009). https://doi.org/10.1038/nrgastro.2009.107
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DOI: https://doi.org/10.1038/nrgastro.2009.107
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