Abstract
Metabolic labeling of glycans with a bioorthogonal chemical reporter such as the azide enables their visualization in cells and organisms as well as the enrichment of specific glycoprotein types for proteomic analysis. This process involves two steps. Azido sugars are fed to cells or organisms and integrated by the glycan biosynthetic machinery into various glycoconjugates. The azido sugars are then covalently tagged with imaging probes or epitope tags, either ex vivo or in vivo, using an azide-specific reaction. This protocol details the syntheses of the azido sugars N-azidoacetylmannosamine (ManNAz), N-azidoacetylgalactosamine (GalNAz), N-azidoacetylglucosamine (GlcNAz) and 6-azidofucose (6AzFuc), and the detection reagents phosphine-FLAG and phosphine-FLAG-His6. Applications to the visualization of cellular glycans and enrichment of glycoproteins for proteomic analysis are described. The synthesis of the azido sugars (ManNAz, GalNAz, GlcNAz or 6AzFuc) or detection reagents (phosphine-FLAG or phosphine-FLAG-His6) can be completed in approximately 1 week. A cell metabolic labeling experiment can be completed in approximately 4 d.
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References
Prescher, J.A., Dube, D.H. & Bertozzi, C.R. Chemical remodelling of cell surfaces in living animals. Nature 430, 873–877 (2004).
Dube, D.H., Prescher, J.A., Quang, C.N. & Bertozzi, C.R. Probing mucin-type O-linked glycosylation in living animals. Proc. Natl. Acad. Sci. USA 103, 4819–4824 (2006).
Laughlin, S.T. et al. Metabolic labeling of glycans with azido sugars for visualization and glycoproteomics. Methods Enzymol. 415, 230–250 (2006).
Prescher, J.A. & Bertozzi, C.R. Chemical technologies for probing glycans. Cell 126, 851–854 (2006).
Saxon, E. & Bertozzi, C.R. Cell surface engineering by a modified Staudinger reaction. Science 287, 2007–2010 (2000).
Agard, N.J., Prescher, J.A. & Bertozzi, C.R. A strain-promoted [3 + 2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems. J. Am. Chem. Soc. 126, 15046–15047 (2004).
Speers, A.E., Adam, G.C. & Cravatt, B.F. Activity-based protein profiling in vivo using a copper(i)-catalyzed azide-alkyne [3 + 2] cycloaddition. J. Am. Chem. Soc. 125, 4686–4687 (2003).
Hanson, S.R. et al. Tailored glycoproteomics and glycan site mapping using saccharide-selective bioorthogonal probes. J. Am. Chem. Soc. 129, 7266–7267 (2007).
Luchansky, S.J., Goon, S. & Bertozzi, C.R. Expanding the diversity of unnatural cell-surface sialic acids. ChemBioChem 5, 371–374 (2004).
Hang, H.C., Yu, C., Kato, D.L. & Bertozzi, C.R. A metabolic labeling approach toward proteomic analysis of mucin-type O-linked glycosylation. Proc. Natl. Acad. Sci. USA 100, 14846–14851 (2003).
Vocadlo, D.J., Hang, H.C., Kim, E.J., Hanover, J.A. & Bertozzi, C.R. A chemical approach for identifying O-GlcNAc-modified proteins in cells. Proc. Natl. Acad. Sci. USA 100, 9116–9121 (2003).
Sprung, R. et al. Tagging-via-substrate strategy for probing O-GlcNAc modified proteins. J. Proteome Res. 4, 950–957 (2005).
Rabuka, D., Hubbard, S.C., Laughlin, S.T., Argade, S.P. & Bertozzi, C.R. A chemical reporter strategy to probe glycoprotein fucosylation. J. Am. Chem. Soc. 128, 12078–12079 (2006).
Agard, N.J., Baskin, J.M., Prescher, J.A., Lo, A. & Bertozzi, C.R. A comparative study of bioorthogonal reactions with azides. ACS Chem. Biol. 1, 644–648 (2006).
Lin, F.L., Hoyt, H.M., van Halbeek, H., Bergman, R.G. & Bertozzi, C.R. Mechanistic investigation of the Staudinger ligation. J. Am. Chem. Soc. 127, 2686–2695 (2005).
Chang, P.V., Prescher, J.A., Hangauer, M.J. & Bertozzi, C.R. Imaging cell surface glycans with bioorthogonal chemical reporters. J. Am. Chem. Soc. 129, 8400–8401 (2007).
Luchansky, S.J., Argade, S., Hayes, B.K. & Bertozzi, C.R. Metabolic functionalization of recombinant glycoproteins. Biochemistry 43, 12358–12366 (2004).
Tian, E. & Hagen, K.G. O-linked glycan expression during Drosophila development. Glycobiology 17, 820–827 (2007).
Drake, R.R. et al. Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers. Mol. Cell Proteomics 5, 1957–1967 (2006).
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Laughlin, S., Bertozzi, C. Metabolic labeling of glycans with azido sugars and subsequent glycan-profiling and visualization via Staudinger ligation. Nat Protoc 2, 2930–2944 (2007). https://doi.org/10.1038/nprot.2007.422
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DOI: https://doi.org/10.1038/nprot.2007.422
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