mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa


Broad host-range mini-Tn7 vectors facilitate integration of single-copy genes into bacterial chromosomes at a neutral, naturally evolved site. Here we present a protocol for employing the mini-Tn7 system in bacteria with single attTn7 sites, using the example Pseudomonas aeruginosa. The procedure involves, first, cloning of the genes of interest into an appropriate mini-Tn7 vector; second, co-transfer of the recombinant mini-Tn7 vector and a helper plasmid encoding the Tn7 site-specific transposition pathway into P. aeruginosa by either transformation or conjugation, followed by selection of insertion-containing strains; third, PCR verification of mini-Tn7 insertions; and last, optional Flp-mediated excision of the antibiotic-resistance selection marker present on the chromosomally integrated mini-Tn7 element. From start to verification of the insertion events, the procedure takes as little as 4 d and is very efficient, yielding several thousand transformants per microgram of input DNA or conjugation mixture. In contrast to existing chromosome integration systems, which are mostly based on species-specific phage or more-or-less randomly integrating transposons, the mini-Tn7 system is characterized by its ready adaptability to various bacterial hosts, its site specificity and its efficiency. Vectors have been developed for gene complementation, construction of gene fusions, regulated gene expression and reporter gene tagging.

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Figure 1: Components of the Tn7 cloning and integration system.
Figure 2: Suicide delivery vector and chromosomal integration of mini-Tn7.
Figure 3: Tn7 transposition in a bacterium with a single attTn7 site: example P. aeruginosa.


  1. 1

    Blatny, J.M., Brautaset, T., Winther-Larsen, H.C., Karunakaran, P. & Valla, S. Improved broad-host-range RK2 vectors for high and low regulated gene expression levels in Gram-negative bacteria. Plasmid 38, 35–51 (1997).

    CAS  Article  Google Scholar 

  2. 2

    Trieu-Cuot, P., Carlier, C., Poyart-Salmeron, C. & Courvalin, P. An integrative vector exploiting the transposition properties of Tn1545 for insertional mutagenesis and cloning of genes from Gram-positive bacteria. Gene 106, 21–27 (1991).

    CAS  Article  PubMed  Google Scholar 

  3. 3

    Stover, C.K. et al. New use of BCG for recombinant vaccines. Nature 351, 456–460 (1991).

    CAS  Article  PubMed  Google Scholar 

  4. 4

    Hoang, T.T., Kutchma, A.J., Becher, A. & Schweizer, H.P. Integration proficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains. Plasmid 43, 59–72 (2000).

    CAS  Article  PubMed  Google Scholar 

  5. 5

    Kieser, T., Bibb, M.J., Buttner, M.J., Chater, K.F. & Hopwood, D.A. Practical Streptomyces Genetics (The John Innes Foundation, Colney, UK, 2000).

    Google Scholar 

  6. 6

    Charpentier, E. et al. Novel cassette-based shuttle vector system for Gram-positive bacteria. Appl. Environ. Microbiol. 70, 6076–6085 (2004).

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  7. 7

    de Lorenzo, V., Herrero, M., Jakubzik, U. & Timmis, K.N. Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in Gram-negative bacteria. J. Bacteriol. 172, 6568–6572 (1990).

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  8. 8

    Craig, N.L. Transposon Tn7. in Mobile DNA (eds. Berg, D.E. & Howe, M.M.) 211–225 (American Society for Microbiology, Washington DC, 1989).

    Google Scholar 

  9. 9

    Craig, N.L. Transposon Tn7. Curr. Top. Microbiol. Immunol. 204, 27–48 (1996).

    CAS  PubMed  Google Scholar 

  10. 10

    Choi, K.-H. et al. A Tn7-based broad-range bacterial cloning and expression system. Nat. Methods 2, 443–448 (2005).

    CAS  Article  PubMed  Google Scholar 

  11. 11

    Peters, J.E. & Craig, N.L. Tn7: smarter than we thought. Nat. Rev. Mol. Cell Biol. 2, 806–814 (2001).

    CAS  Article  PubMed  Google Scholar 

  12. 12

    Bao, Y., Lies, D.P., Fu, H. & Roberts, G.P. An improved Tn7-based system for the single-copy insertion of cloned genes into the chromosomes of Gram-negative bacteria. Gene 109, 167–168 (1991).

    CAS  Article  PubMed  Google Scholar 

  13. 13

    Hojberg, O., Schnider, U., Winteler, H.V., Sorensen, J. & Haas, D. Oxygen-sensing reporter strain of Pseudomonas fluorescens for monitoring the distribution of low-oxygen habitats in soil. Appl. Environ. Microbiol. 65, 4085–4093 (1999).

    CAS  PubMed  PubMed Central  Google Scholar 

  14. 14

    Koch, B., Jensen, L.E. & Nybroe, O. A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria. J. Mirobiol. Methods 45, 187–195 (2001).

    CAS  Article  Google Scholar 

  15. 15

    Klausen, M. et al. Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants. Mol. Microbiol. 48, 1511–1524 (2003).

    CAS  Article  PubMed  Google Scholar 

  16. 16

    Lambertsen, L., Sternberg, C. & Molin, S. Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. Environ. Microbiol. 6, 726–732 (2004).

    CAS  Article  PubMed  Google Scholar 

  17. 17

    Stellwagen, A.E. & Craig, N.L. Avoiding self: two Tn7-encoded proteins mediate target immunity in Tn7 transposition. EMBO J. 16, 6823–6834 (1997).

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  18. 18

    Choi, K.-H., DeShazer, D. & Schweizer, H.P. mini-Tn7 insertion in bacteria with multiple glmS-linked attTn7 sites: example Burkholderia mallei ATCC 23344. Nat. Protocols 10.1038/nprot2006.25 (2006).

  19. 19

    Choi, K.-H. & Schweizer, H.P. mini-Tn7 insertion in bacteria with secondary, non-glmS-linked attTn7 sites: example Proteus mirabilis HI4320. Nat. Protocols 1, 170–178 (2006).

    CAS  Article  PubMed  Google Scholar 

  20. 20

    Becher, A. & Schweizer, H.P. Integration-proficient Pseudomonas aeruginosa vectors for isolation of single copy chromosomal lacZ and lux gene fusions. BioTechniques 29, 948–954 (2000).

    CAS  Article  PubMed  Google Scholar 

  21. 21

    Schweizer, H.P., Hoang, T.T., Propst, K.L., Ornelas, H.R. & Karkhoff-Schweizer, R.R. Vector design and development of host strains for Pseudomonas. in Genetic Engineering (ed. Setlow, J.K.) 69–81 (Kluwer-Academic/Plenum, New York, 2001).

    Google Scholar 

  22. 22

    Wyckoff, T.J. & Wozniak, D.J. Transcriptional analysis of genes involved in Pseudomonas aeruginosa biofilms. Methods Enzymol. 336, 144–151 (2001).

    CAS  Article  PubMed  Google Scholar 

  23. 23

    Sauer, K., Camper, A.K., Ehrlich, G.D., Costerton, J.W. & Davies, D.G. Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J. Bacteriol. 184, 1140–1154 (2002).

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  24. 24

    Choi, K.-H., Kumar, A. & Schweizer, H.P. A 10 min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J. Microbiol. Methods 64, 391–397 (2006).

    CAS  Article  PubMed  Google Scholar 

  25. 25

    Hoang, T.T., Karkhoff-Schweizer, R.R., Kutchma, A.J. & Schweizer, H.P. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212, 77–86 (1998).

    CAS  Article  Google Scholar 

  26. 26

    Sambrook, J. & Russell, D.W. Molecular Cloning (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 2001).

    Google Scholar 

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We thank all present and former members of the Schweizer laboratory, especially R.R. Karkhoff-Schweizer, C. Lopez, J. Gaynor, S. Joshi, K. White and many undergraduate students, for their important contributions to establishing the Tn7 system in various bacteria, especially P. aeruginosa. This work was supported by a Public Health Service grant (AI058141) from the US National Institute of Allergy and Infectious Diseases (NIAID).

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K.H.C. performed all experiments and assisted in writing the manuscript; H.P.S. supervised the research and wrote the manuscript.

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Correspondence to Herbert P Schweizer.

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The authors declare no competing financial interests.

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Choi, K., Schweizer, H. mini-Tn7 insertion in bacteria with single attTn7 sites: example Pseudomonas aeruginosa. Nat Protoc 1, 153–161 (2006).

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