Abstract
The amount of cholesterol made by many plants is not negligible. Whereas cholesterogenesis in animals was elucidated decades ago, the plant pathway has remained enigmatic. Among other roles, cholesterol is a key precursor for thousands of bioactive plant metabolites, including the well-known Solanum steroidal glycoalkaloids. Integrating tomato transcript and protein co-expression data revealed candidate genes putatively associated with cholesterol biosynthesis. A combination of functional assays including gene silencing, examination of recombinant enzyme activity and yeast mutant complementation suggests the cholesterol pathway comprises 12 enzymes acting in 10 steps. It appears that half of the cholesterogenesis-specific enzymes evolved through gene duplication and divergence from phytosterol biosynthetic enzymes, whereas others act reciprocally in both cholesterol and phytosterol metabolism. Our findings provide a unique example of nature's capacity to exploit existing protein folds and catalytic machineries from primary metabolism to assemble a new, multi-step metabolic pathway. Finally, the engineering of a ‘high-cholesterol’ model plant underscores the future value of our gene toolbox to produce high-value steroidal compounds via synthetic biology.
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Acknowledgements
We are grateful to D. Twafik for useful suggestions in phylogenetic analysis. A.A. is the incumbent of the Peter J. Cohn Professorial Chair. We thank the Adelis Foundation, the Leona M. and Harry B. Helmsley Charitable Trust, the Jeanne and Joseph Nissim Foundation for Life Sciences, Tom and Sondra Rykoff Family Foundation Research and the Raymond Burton Plant Genome Research Fund for supporting the laboratory activity of A.A. The work was supported by the Israel Science Foundation (ISF Grant No. 1805/15) and the European Research Council (ERC; SAMIT-FP7) personal grants to A.A. P.D.S. is grateful to the Planning and Budgeting Committee of the Council for Higher Education, Israel for the VATAT fellowship. The research in the laboratory of A.G. was financially supported by the VIB International PhD Fellowship Program (fellowship to P.A.) and the Research Foundation Flanders (postdoctoral fellowships to J.P. and L.P.). A.K was supported by a short-term EMBO fellowship (EMBO-ASTF-146-2014). The research in the laboratories of A.A. and A.G. was supported by the European Union Seventh Framework Program FP7/2007–2013 under grant agreement no. 613692–TriForC.
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Contributions
P.D.S. designed experiments, performed the research and wrote the paper. J.P., P.A., L.P. and A.G. designed part of the experiments and performed all yeast complementation assays and wrote the paper. S.P. assisted in the VIGS experiments. J.S. and E.S. assisted in the co-expression data analysis. H.M. performed the confocal imaging experiments for localization studies. I.R. and S. Meir assisted with metabolomics data analysis and operated the LCMS. S. Malitsky assisted with GC-S metabolomics data analysis and operated the GCMS. M.Y. and T.U. performed recombinant protein expression in insect cells and isolated microsomes fractions. P.D.C. assisted in wild tomato accessions RNA sequencing. A.M. assisted in sterol extractions and tissue culture work. A.K. and A.P.G. designed part of the research and wrote the paper. H.S. assisted in data analysis and manuscript preparation. A.A. designed the research and wrote the paper.
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Supplementary information
Supplementary Information
Supplementary Information. (PDF 32015 kb)
Supplementary Data 1
Detailed list of genes. (XLSX 18 kb)
Supplementary Data 2
Amino acid sequences. (PDF 286 kb)
Supplementary File 1
Chemical structure: 4α-methyl-5α-cholest-7-en-3βol. (CDX 3 kb)
Supplementary File 2
Chemical structure: 4α-methyl-ergostatrienol. (CDX 3 kb)
Supplementary File 3
Chemical structure: 4α-methyl-24,25-dihydrozymosterol. (CDX 3 kb)
Supplementary File 4
Chemical structure: 4α-methylcholesta-8,14-dien-3β-ol. (CDX 3 kb)
Supplementary File 5
Chemical structure: 4α-methyl-ergostadienol. (CDX 3 kb)
Supplementary File 6
Chemical structure: 7-dehydrocholesterol. (CDX 3 kb)
Supplementary File 7
Chemical structure: 24-ethylidenelophenol. (CDX 3 kb)
Supplementary File 8
Chemical structure: 24-methylenecholesterol. (CDX 3 kb)
Supplementary File 9
Chemical structure: 24-methylenecycloartanol. (CDX 3 kb)
Supplementary File 10
Chemical structure: 24-methylenelophenol. (CDX 3 kb)
Supplementary File 11
Chemical structure: 31-nor-24,25-dihydrolanosterol. (CDX 3 kb)
Supplementary File 12
Chemical structure: 31-norcycloartano. (CDX 3 kb)
Supplementary File 13
Chemical structure: α-chaconine. (CDX 3 kb)
Supplementary File 14
Chemical structure: α-solanine. (CDX 4 kb)
Supplementary File 15
Chemical structure: α-tomatine. (CDX 5 kb)
Supplementary File 16
Chemical structure: β-sitosterol. (CDX 3 kb)
Supplementary File 17
Chemical structure: β-amyrin. (CDX 3 kb)
Supplementary File 18
Chemical structure: campesterol. (CDX 3 kb)
Supplementary File 19
Chemical structure: cholesta-7-en-3β-ol. (CDX 3 kb)
Supplementary File 20
Chemical structure: cholesterol. (CDX 3 kb)
Supplementary File 21
Chemical structure: cycloartanol. (CDX 3 kb)
Supplementary File 22
Chemical structure: cycloartenol. (CDX 3 kb)
Supplementary File 23
Chemical structure: cycloeucalenol. (CDX 3 kb)
Supplementary File 24
Chemical structure ( Delta 5,7 avenasterol) (CDX 3 kb)
Supplementary File 25
chemical structure(Delta 5, Episterol) (CDX 3 kb)
Supplementary File 26
Chemical structure (structure 2): 4,4-dimethylcholesta-8,24-dien-3β-ol (CDX 3 kb)
Supplementary File 27
Chemical structure: δ-7-avenasterol. (CDX 3 kb)
Supplementary File 28
Chemical structure: episterol. (CDX 3 kb)
Supplementary File 29
Chemical structure: esculeoside A. (CDX 7 kb)
Supplementary File 30
Chemical structure: isofucosterol. (CDX 3 kb)
Supplementary File 31
Chemical structure: lanosterol. (CDX 3 kb)
Supplementary File 32
Chemical structure: obtusifoliol. (CDX 3 kb)
Supplementary File 33
Chemical structure: stigmasterol. (CDX 3 kb)
Supplementary File 34
Chemical structure (structure 1): 4,4-dimethylcholesta-8,14(15),24-trien-3β-ol. (CDX 3 kb)
Supplementary File 35
Chemical structure (structure 3): cholesta-8,24-dien-3β-ol. (CDX 3 kb)
Supplementary File 36
Chemical structure (structure 4): cholesta-7,24-dien-3β-ol. (CDX 3 kb)
Supplementary File 37
Chemical structure (structure 5): 7-dehydrodesmosterol. (CDX 3 kb)
Supplementary File 38
Chemical structure (structure 6): desmosterol. (CDX 3 kb)
Supplementary File 39
Chemical structure: uttroside B. (CDX 7 kb)
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Sonawane, P., Pollier, J., Panda, S. et al. Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism. Nature Plants 3, 16205 (2017). https://doi.org/10.1038/nplants.2016.205
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DOI: https://doi.org/10.1038/nplants.2016.205
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