The molecular mechanisms underlying the aging process have garnered much attention in recent decades because aging is the most significant risk factor for many chronic diseases such as type 2 diabetes and cancer. Until recently, the aging process was not considered to be an actively regulated process; therefore, discovering that the insulin/insulin-like growth factor-1 signaling pathway is a lifespan-regulating genetic pathway in Caenorhabditis elegans was a major breakthrough that changed our understanding of the aging process. Currently, it is thought that animal lifespans are influenced by genetic and environmental factors. The genes involved in lifespan regulation are often associated with major signaling pathways that link the rate of aging to environmental factors. Although many of the major mechanisms governing the aging process have been identified from studies in short-lived model organisms such as yeasts, worms and flies, the same mechanisms are frequently observed in mammals, indicating that the genes and signaling pathways that regulate lifespan are highly conserved among different species. This review summarizes the lifespan-regulating genes, with a specific focus on studies in C. elegans.
Aging is an inevitable process in nearly all organisms, and the aging process was previously regarded as a passive entropic process of tissue deterioration caused by damage to macromolecules of the cell, such as genomic DNA, proteins and lipids. In the mid-nineteenth century, Darwin proposed that all wild species arise and develop through the natural selection of small inherited variations that increase the individual’s ability to survive and reproduce to ensure the welfare of the species. Because aging is a process that occurs after reproduction, biologists have presumed that the regulation of aging was not a critical factor for the evolution of life. However, hybrid mice generated from long- and short-lived animals inherit longevity,1 suggesting that lifespan is a genetically regulated trait. Since the isolation of the first long-lived mutant in Caenorhabditis elegans (C. elegans), a number of reports have described various genes and signaling pathways that regulate longevity in model organisms such as yeasts, worms, flies and mice.
Since Brenner first introduced the C. elegans model in the 1960s, this free-living soil nematode has been widely used as a model organism in many areas of research, including aging. C. elegans is a self-fertilizing hermaphrodite that lives for a few weeks when cultured at 20 °C, and it was first used as a model organism to study aging in the 1970s.2,
Insulin/insulin-like growth factor-1 signaling
As previously mentioned, the first pathway implicated in the regulation of the aging process in animals was the IIS pathway.10 In C. elegans, mutations that decrease the activity of DAF-2, the C. elegans homolog of the insulin/insulin-like growth factor-1 receptor, more than double the lifespan of the animal,11 and mutations that affect the activity of the IIS downstream target AGE-1, the C. elegans homolog of phosphatidylinositol 3-kinase, are also associated with increased longevity.8,9 Longevity induced by a reduction in IIS signaling is entirely dependent on DAF-16, the C. elegans homolog of the forkhead box FoxO transcription factor.11 DAF-2, AGE-1 and DAF-16 constitute the three key components of the IIS pathway.12,
Although DAF-16 has a pivotal role in regulating lifespan, several lines of evidence suggest that it does not necessarily act alone. First, the overexpression of DAF-16 in wild-type animals only slightly increases their lifespan, indicating that solely increasing levels of DAF-16 is not sufficient to significantly extend longevity.22 Second, the nuclear localization of DAF-16, which is necessary for its transcriptional activity, is not sufficient to extend lifespan.23 Third, although the canonical DAF-16-binding element24 is present in the 5-kb upstream region of 78% of C. elegans genes,25 only a small number of these genes are activated in young adult animals.21 Thus, there may be other factors that assist DAF-16 in activating particular genes in the appropriate context. Indeed, JNK-1 (the C. elegans homolog of c-Jun N-terminal kinase) and CST-1 (the C. elegans homolog of mammalian ste20-like kinase (MST)) have been shown to regulate DAF-16 activity via post-translational modification.26,27 Overexpression of JNK-1 or CST-1 promotes lifespan extension in a DAF-16-dependent manner,26,27 suggesting that JNK-1 and CST-1 stimulate DAF-16 activity. Lifespan extension induced by mutations in daf-7 (a gene encoding a member of the C. elegans transforming growth factor-β family) is dependent on DAF-16, suggesting that the transforming growth factor-β pathway is an upstream regulator of IIS-mediated longevity.28 The ubiquitin proteasome system (UPS) also regulates DAF-16 activity. The loss of rle-1, a gene encoding an E3 ubiquitin ligase, increases lifespan,29 whereas the loss of math-33, a gene encoding deubiquitylase, suppresses the extended lifespan of daf-2 mutants.30 There are several additional transcription factors that also function as cofactors of DAF-16. Similar to mutations in daf-16, mutations in hsf-1 (a gene encoding the C. elegans homolog of heat-shock transcription factor), skn-1 (a gene encoding the C. elegans homolog of nuclear respiration factor 2 (Nrf2)) or pqm-1 (a gene encoding the C2H2-type zinc finger and leucine zipper-containing protein) suppress the lifespan extension phenotype of daf-2 mutants.31,
C. elegans contains several tissue types, and the tissue-specific requirements of the IIS pathway with respect to longevity have been studied; however, a number of these studies have demonstrated conflicting results. Tissue-specific restoration experiments in daf-2 and age-1 mutants have revealed that the restoration of DAF-2 and AGE-1 expression in neurons, respectively, but not in the intestine is sufficient to decrease the lifespan of the long-lived daf-2 and age-1 mutants, respectively.36 However, a recent report demonstrated that AGE-1 expression in the intestine can decrease the long lifespan of the age-1 mutant.37 Moreover, tissue-specific restoration experiments in a daf-2;daf-16 mutant demonstrated that restoration of DAF-16 expression in the intestine extends the lifespan, whereas the restoration of DAF-16 expression in neurons exhibited only modest effects on lifespan.38 It has also been reported that the IIS pathway acts in both a cell-autonomous and non-autonomous manner,36,
It has been reported that DAF-16 mediates the longevity effect associated with certain dietary restriction regimens. Although DAF-16 is dispensable for the longevity induced by chronic calorie restriction (e.g., eat-2 mutant),41 it is required for the longevity induced by calorie restriction in middle-aged animals.42 DAF-16 is also required for intermittent fasting-induced longevity43 but not for continuous fasting-induced longevity.44,45 These results suggest that DAF-16 activation is dependent on a particular stimulus, as well as the timing or duration of the exposure to that stimulus.
TOR is a mechanistic target of rapamycin or mammalian target of rapamycin, and a serine/threonine kinase that regulates cell growth, proliferation, motility and survival, as well as protein synthesis, autophagy and transcription.46 TOR is activated under nutrient- and energy-sufficient conditions, which in turn stimulate growth and block salvage pathways, such as autophagy.46 Thus, a reduction in TOR activity is thought to mimic nutrient- and energy-deficient conditions. Consistent with this hypothesis, inhibiting TOR signaling increases the lifespan in C. elegans in a DAF-16-dependent manner.47,48 The effects on longevity induced by the inhibition of TOR signaling in C. elegans are mediated by the transcription factor PHA-4/FoxA.49 PHA-4 has been shown to regulate autophagy, a process that has a significant role in lifespan regulation.50,51 A combination of two lifespan-extending genetic manipulations, the inhibition of daf-2 and inhibition of rsks-1 (a C. elegans S6 kinase and a TOR target) additively extend the lifespan in C. elegans. 52 Thus, the IIS pathway and the TOR pathway act together to mediate the distinct manner in which lifespan is regulated in C. elegans.
It was recently reported that food restriction-induced TOR inhibition promotes longevity by inducing PHA-4.43,53 Interestingly, the TOR pathway promotes longevity by inhibiting the IIS pathway under fasting conditions.43 These observations suggest that the TOR pathway exerts both anti- and pro-longevity effects in a context-dependent manner.
Sirtuins are members of the nicotinamide adenine dinucleotide (NAD)-dependent protein deacetylase family of molecules, and directly linked to cellular nutrient signaling through NAD+.54 Sir2 is a positive regulator of lifespan in Saccharomyces cerevisiae,55 and in C. elegans, overexpression of SIR-2.1, the C. elegans homolog of Sir2, has been reported to extend lifespan56 in a DAF-16-dependent manner.57 SIR-2.1 has been reported to bind to DAF-16 in a 14-3-3-dependent manner in response to stress and promote DAF-16 activation.57 The pro-longevity activity of SIR-2.1 has been associated with a degree of controversy because a recent report demonstrated that the increased longevity, which was initially considered to result from sir-2.1 overexpression, was caused by a background mutation in the transgenic animals used in these experiments.58 However, subsequent studies have demonstrated that the overexpression of sir-2.1 in mutants outcrossed to a different genetic background significantly increased lifespan, albeit to a lesser extent than what was initially observed in the transgenic animals carrying the background mutation.59,
Studies have demonstrated that Sir2 can mediate mild dietary restriction-induced longevity63 but not severe dietary restriction-induced longevity64 in S. cerevisiae, although Tsuchiya et al.
65 reported that dietary restriction-induced longevity in S. cerevisiae is not dependent on sirtuins. In C. elegans, the increased longevity induced by SIR-2.1 overexpression and eat-2-induced longevity do not exhibit an additive effect,66 suggesting that SIR-2.1 has a role in dietary restriction-induced longevity similar to that of eat-2. However, sir-2.1 has been shown to be dispensable for the increase in longevity induced by fasting and calorie restriction in middle-aged animals.43,
AMP-activated protein kinase
AMP-activated protein kinase (AMPK) is a conserved cellular energy sensor that helps cells adapt to low-energy conditions.68 AMPK restores energy homeostasis by stimulating catabolic processes and blocking energy-consuming processes.69 The loss of aak-2, the gene encoding the C. elegans AMPK protein, decreases lifespan, and the increased expression of aak-2 increases lifespan.41 Furthermore, overexpression of a constitutively active form of AMPK has been reported to increase lifespan to a greater extent than aak-2 upregulation.42,70 Metformin is an indirect AMPK agonist that also extends lifespan in C. elegans. 71 AAK-2 is required for the longevity effects mediated by reduced IIS,41 and DAF-16 is required for the longevity effects mediated by activated AMPK, suggesting that DAF-16 and AMPK act together in a feedback loop. Indeed, AAK-2 activates DAF-16,42 and DAF-16 regulates the expression of aakg-4, a gene encoding a regulatory subunit of AMPK.52 Both AMPK and sirtuins are cellular energy sensors, as well as pro-longevity effectors, suggesting that these factors could interact with each other. Indeed, the increased longevity observed in animals overexpressing sir-2.1 is dependent on aak-2,72 although these results were derived from experiments with transgenic worms harboring the confounding background mutation that was previously mentioned.58 CRTC (cAMP response element binding protein-regulating transcriptional coactivator) has been reported to mediate the lifespan extension induced by AMPK activation.70 Recently, neuronal AMPK activation was shown to regulate organismal lifespan via catecholamine signaling in C. elegans. 73
An AMPK–DAF-16 signaling pathway is activated by calorie restriction during middle age and mediates lifespan extension.42 However, this pathway is dispensable to lifespan extensions induced by chronic calorie restriction, such as that observed in the eat-2 mutant.47 Moreover, the transcription factors that are required for lifespan extension induced by chronic calorie restriction (e.g., PHA-4 and SKN-1) are dispensable for longevity induced by calorie restriction in middle-aged animals.67 Thus, the timing and quantity of food might be important factors in specifying which signaling pathway is activated.
Mitochondria are essential cell organelles that provide functions that are central to cellular metabolism and apoptosis. Mitochondria are also a major source of reactive oxidative species (ROS). ROS are responsible for damage to macromolecules such as DNA, protein and lipids, and they also promote the deterioration of cells, tissues and, ultimately, the entire organism. Mitochondrial ROS are thought to be the primary cause of aging, and this hypothesis is referred to as the mitochondrial free radical theory of aging. Indeed, non-biased large-scale RNAi screens for genes associated with lifespan extension have revealed that most of the genes that promote lifespan extension are involved in metabolic pathways and components of the mitochondrial electron transport chain.74,
Because mitochondria have a central role in cellular energy production, it is plausible that mitochondria also have an important role in regulating lifespan in response to dietary restrictions. Indeed, lifespan extension by glucose restriction is thought to be mediated by mitohormesis (the specific type of hormesis that is caused by increased formation of ROS within the mitochondria) in C. elegans. 85 Restricting glucose promotes the formation of ROS, which in turn may elicit the mitohormesis response.85 SKN-1 and AAK-2 mediate both calorie restriction-induced longevity42,86 and mitohormesis-mediated longevity,80,83 suggesting that SKN-1 and AAK-2 might function as a link between dietary restriction and mitochondria function.
Epigenetic mechanisms, such as DNA methylation, histone modification and noncoding RNAs, regulate the interpretation of genetic information and are linked to numerous biological processes. In humans, epigenetic changes correlate with older age in normal individuals and are a hallmark of patients with progeria syndrome; however, the significance of epigenetics in regulating the rate of aging is not well understood.
It has been reported that histone-modifying enzymes also have a role in lifespan regulation. A genome-wide RNAi screen identified two SET domain proteins (SET-9 and SET-15) that accelerate aging.76 Greer et al. 87 demonstrated that inhibition of the histone H3K4 methylation complex (composed of ASH-2, WDR-5 and SET-2) and overexpression of RBR-2, the enzyme that mediates H3K4 demethylation, resulted in lifespan extension. The lifespan extension associated with H3K4-modifying enzymes is dependent on the production of mature eggs.87 Surprisingly, although these genetic manipulations were present only in the parent animals, up to four generations of descendants presented extended lifespans.88 However, the molecular mechanisms for the transgenerational inheritance of longevity remain unknown. In addition, the inhibition of H3K27 demethylase UTX-1 has also been shown to extend lifespan.89,90
Noncoding RNAs also have an important role in lifespan regulation. MicroRNA (miRNA) is a class of noncoding RNA molecules that regulate the expression of target mRNAs in a sequence-dependent manner. The miRNA lin-4 was the first discovered miRNA, and it regulates the lifespan of C. elegans. 91 Lifespan regulation associated with lin-4 and its target LIN-14 is mediated by the IIS pathway.91 Following the identification of lin-4, a number of additional miRNAs have been implicated in lifespan regulation.92 Recently, a long noncoding RNA named tts-1 was shown to regulate lifespan by modulating ribosomal activity.93
Although dietary restrictions and epigenetic mechanisms are both known to be involved in lifespan regulation, the potential links between epigenetics and dietary restriction-induced longevity remain largely unknown. miR-228 and miR-71 were recently reported to be necessary for calorie restriction-induced longevity.94 These miRNAs regulate lifespan by interacting with the dietary restriction responsive transcription factors PHA-4/FoxA and SKN-1/Nrf2.94 Pandit et al. 95 demonstrated that PHA-4 regulates the expression of miRNAs in calorie-restricted animals. These studies suggest that miRNAs are involved in at least some of the mechanisms that mediate dietary restriction-induced longevity.
Protein homeostasis, or proteostasis, is essential to life. The loss of proteostasis is often involved in protein aggregation, a cellular process that is associated with many age-related disorders and often observed in aged organisms.96 The loss of proteostasis results in the deterioration in cellular function; therefore, it may be one of the main causes of organismal aging. Proteostasis is maintained by a complex interplay among protein synthesis, degradation and quality control. Polysome profiling analyses have revealed that the rate of protein synthesis in C. elegans is markedly decreased in 10-day-old animals compared with 4-day-old animals.97 These findings suggest that the loss of proteostasis during old age does not necessarily result from excess protein synthesis. Paradoxically, the C. elegans lifespan can be extended by decreasing protein synthesis. The long-lived daf-2 mutant exhibits a reduced rate of protein translation.93 The inhibition of eukaryotic initiation factors, ribosomal proteins and TOR signaling molecules, which is responsible for decreased translation in these animals, has been reported to account for the increased lifespan.98,
Autophagy is an evolutionarily conserved intracellular degradation system that delivers cytoplasmic components to the lysosome.106 The autophagy system has been shown to be involved in several longevity pathways. The first study to evaluate the role of autophagy in lifespan regulation in C. elegans revealed that RNAi targeting bec-1, a gene encoding the C. elegans ortholog of yeast ATG6, significantly suppresses the long lifespan of daf-2 mutants.20 Subsequent studies have demonstrated that autophagy genes are also required for the longevity induced by reduced IIS and indicated that autophagy is induced in daf-2 Dauer larvae and adults.20,50,107,108 However, one study reported that RNAi targeting autophagy genes can extend lifespan under certain conditions.109 In addition, autophagy can regulate calorie restriction-induced lifespan extensions. Accordingly, RNAi targeting autophagy genes abolishes the lifespan extension induced by the eat-2 mutation or TOR signaling inhibition.50,108 Moreover, autophagy activity is enhanced in both TOR RNAi-treated animals and animals subjected to dietary restriction in a PHA-4-dependent manner.50 Autophagy also facilitates lipid storage in the intestine.110 Thus, autophagy might provide energy to the animal by stimulating lipogenesis in response to dietary restrictions. Consistent with this hypothesis, fasting induces both lipase genes and autophagy genes via activation of the HLH-30 transcription factor.110 Inhibition of mitochondrial respiration extends lifespan in wild-type animals but not in autophagy mutants,108 suggesting that autophagy is also required for the longevity induced by the inhibition of mitochondrial respiration. A recent report demonstrated that mitophagy, a selective type of autophagy targeting mitochondria for degradation, has an important role in maintaining mitochondrial homeostasis during aging.111 Together, these observations indicate that multiple lifespan-extending pathways require autophagy.
Hypoxia inducible factor-1
Hypoxia inducible factor 1 (HIF-1) is considered to be the master transcriptional regulator mediating the cellular response to hypoxia.112 HIF-1 is degraded by the E3 ubiquitin ligase von Hippel Lindau under normal oxygen conditions, and HIF-1 is stabilized under low-oxygen conditions.112 Stabilization of HIF-1 by the downregulation of von Hippel Lindau-1 or overexpression of HIF-1 significantly increases lifespan.113,114 Consistent with these observations, hypoxia induces lifespan extension in a HIF-1-dependent manner.115 HIF-1 also mediates the lifespan extension induced by the increase in ROS following paraquat treatment or respiration inhibition.80,116 Neuronal HIF-1 was recently demonstrated to mediate lifespan extensions by regulating the expression of intestinal flavin-containing monooxygenase (fmo-2) via serotonin secretion.117
Lifespan regulation by the interplay of different tissues
The gonad consists of the germline and somatic gonad, and it has an important role in regulating lifespan in C. elegans. 118 The removal of germline cells by laser microsurgery or genetic manipulation (e.g., glp-1 mutants) increases lifespan, whereas the removal of the gonad (both the germline and somatic gonad) does not.119,120 Because the ablation of both the germline and somatic gonad results in sterility, the longevity induced by germline elimination is not only solely related to a resource trade-off but also to endocrine-mediated lifespan regulation (Figure 1a). In fact, certain endocrine signaling pathways have been shown to regulate longevity in animals without germlines118 (Figure 1a).
The nuclear hormone receptor DAF-12, which responds to the dafachronic acid (DA) ligand, is a key regulator of germline elimination-induced longevity.119 DAF-9 and DAF-36 are also components of the steroid hormone-signaling pathway that contributes to gonad-associated longevity.121,
Germline elimination-induced longevity requires other transcription factors in addition to DAF-12 and DAF-16, including NHR-80 and PHA-4.51,130 NHR-80 links FAT-6 (a gene encoding an acyl-CoA desaturase)-induced fatty acid desaturation to longevity in germline-less animals in a DAF-16-independent manner.130 TOR expression is reduced in glp-1 mutants and results in enhanced autophagy in the intestine via the activity of PHA-4.51 It should be noted that germline elimination regulates DAF-16 in a manner distinct from that of the IIS pathway. Although reduced IIS induces DAF-16 nuclear translocation in all tissues,22 germline elimination induces DAF-16 nuclear translocation only in the intestine of young adult animals.125 In summary, germline elimination extends lifespan by regulating several signaling pathways in somatic tissues, such as the intestine, via endocrine pathways.
Animals sense and process environmental signals to help them prepare for environmental changes. Lifespan regulation by sensory perception was initially identified in C. elegans in studies using mutants defective in sensory perception,131 and the longevity of these mutants was largely but not entirely dependent on DAF-16.131 Gustatory, olfactory and thermosensory neurons were all subsequently shown to influence lifespan.132,133 Together, these studies suggest that neurons that sense environmental cues influence lifespan. Thus, certain sensory neurons shorten lifespan and others extend lifespan in an environmental context-dependent manner.133,
The intestine has an important role in regulating organismal lifespan. There are several lines of evidence suggesting that the intestine receives signals from other cells that modulate organismal lifespan. First, intestinal restoration of DAF-16 significantly increases the lifespan of daf-2;daf-16 mutants.38 Second, intestinal DAF-16 is required for the lifespan extension induced by neuronal HSF-1 overexpression.103 Third, an increase in intestinal fmo-2 expression is required for neuronal HIF-1 activation.117 Fourth, intestinal UPRmt or UPRER is induced in response to neuronal cco-1 knockdown or the overexpression of spliced xbp-1, respectively.101,103 These observations suggest that the intestine is a key target organ responsible for regulating lifespan at the organismal level. Intestinal DAF-16 regulates both DAF-16 and a non-DAF-16 transcription factor in other tissues via INS-7-139 and MDT-15-dependent lipid signals,40 respectively, suggesting that the intestine can act as a sender tissue as well as a receiver tissue (Figure 1c).
Conclusions and future challenges
Although genetic factors have important roles in the regulation of organismal lifespans, environmental factors are also important in lifespan regulation. Following the groundbreaking studies that first identified lifespan-regulating genes in the 1980s and 1990s, a large number of genes have been shown to regulate organismal lifespan. Thus, one of the next major challenges is to determine how these genes link environmental factors to lifespan regulation. As previously mentioned, the relationship between genes and diet is the most important lifespan-regulating environmental cue, and it has been examined in many organisms. Environmental temperature and oxidative status are additional environmental cues that influence lifespan,4,79 and studies examining the relationship between genes and these specific environmental cues have recently been initiated.
One of the goals of aging research is to not only extend lifespan but also extend healthspan. Worms display certain age-associated characteristics that resemble those observed in humans;140 therefore, worms also serve as a useful model for healthspan studies. Healthspan studies in worms include those that have examined mobility declines141 and pharyngeal pumping,142 fluorescent compound dynamics (including lipofuscin and advanced glycosylation end products),143,144 and neuromuscular changes.141,145,146 In addition, the identification of small molecules that potentially slow down aging and extend lifespan in multiple species is another major challenge and goal associated with aging research. C. elegans has multiple advantages that make it a useful model for identifying and evaluating chemical compounds that extend lifespan.147
Aging induces declines in the integrity and function of tissues throughout the organismal body. If aging affects each tissue independently, the mechanism underlying organismal aging could be elucidated by dissecting the aging process associated with each cell type. If certain tissues have a role in coordinating the aging process among different tissues, researchers might focus on the systemic factors used by these tissues to communicate with other tissues. There are several lines of evidence for the presence of an aging control center. Thus, the location and mechanism associated with the regulation of organismal aging by lifespan-regulating genes are additional issues that merit further investigation. These studies will facilitate the development of therapeutic strategies that target the aging control center to help promote health spans in humans.
We thank members of our laboratory for helpful comments on the manuscript. This work was supported by JSPS KAKENHI Grant Number 26221101 (Grant-in-Aid for Scientific Research S).
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Scientific Reports (2019)