Supplementary Figure 5 : Alignment of the experimental thalamus with the ABA reference thalamus.

From: Ontogenetic establishment of order-specific nuclear organization in the mammalian thalamus

Supplementary Figure 5

(a) Aligned single coronal sections from 34 experimental brains (gray outlines) in the position corresponding to ABA section 69. Red lines indicate 6 line profiles used to calculate thalamus edge (i.e. border) variability. D, dorsal; V, ventral. (b) Thalamus border variability for the section in a (n=45). (c) Average border variability for 5 sections along the anterior to posterior axis (n=45). (d) Aligned 3D reference ABA thalamus after normalization (red) with the average experimental thalamus (blue). (e) Percentage of volume overlap between reference ABA thalamus and individual experimental thalami (n=45). Data in b, c and r are presented as median with interquartile range, and whiskers are the minimum and maximum.