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Microbially cleaved immunoglobulins are sensed by the innate immune receptor LILRA2

Abstract

Microbial proteases degrade a variety of host proteins13. However, it has remained largely unknown why microorganisms have evolved to acquire such proteases and how the host responds to microbially degraded products. Here, we have found that immunoglobulins disrupted by microbial pathogens are specifically detected by leukocyte immunoglobulin-like receptor A2 (LILRA2), an orphan activating receptor expressed on human myeloid cells. Proteases from Mycoplasma hyorhinis, Legionella pneumophila, Streptococcus pneumonia and Candida albicans cleaved the N-terminus of immunoglobulins. Identification of the immunoglobulin-cleaving protease from L. pneumophila revealed that the protease is conserved across some bacteria including Vibrio spp. and Pseudomonas aeruginosa. These microbially cleaved immunoglobulins but not normal immunoglobulins stimulated human neutrophils via LILRA2. In addition, stimulation of primary monocytes via LILRA2 inhibited the growth of L. pneumophila. When mice were infected with L. pneumophila, immunoglobulins were cleaved and recognized by LILRA2. More importantly, cleaved immunoglobulins were detected in patients with bacterial infections and stimulated LILRA2-expressing cells. Our findings demonstrate that LILRA2 is a type of innate immune receptor in the host immune system that detects immunoglobulin abnormalities caused by microbial pathogens.

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Figure 1: Recognition of cleaved Ig by LILRA2.
Figure 2: Activation of LILRA2-expressing neutrophils by truncated Ig.
Figure 3: Cleavage of Ig by various pathogens in vitro and in vivo.
Figure 4: Activation of LILRA2-expressing cells by pus fluids from patients with a bacterial infection.

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References

  1. Maeda, H. Role of microbial proteases in pathogenesis. Microbiol. Immunol. 40, 685–699 (1996).

    Article  Google Scholar 

  2. Miyoshi, S. & Shinoda, S. Microbial metalloproteases and pathogenesis. Microbes. Infect. 2, 91–98 (2000).

    Article  Google Scholar 

  3. Finlay, B. B. & McFadden, G. Anti-immunology: evasion of the host immune system by bacterial and viral pathogens. Cell 124, 767–782 (2006).

    Article  Google Scholar 

  4. Arase, H. & Lanier, L. L. Specific recognition of virus-infected cells by paired NK receptors. Rev. Med. Virol. 14, 83–93 (2004).

    Article  Google Scholar 

  5. Arase, H., Mocarski, E. S., Campbell, A. E., Hill, A. B. & Lanier, L. L. Direct recognition of cytomegalovirus by activating and inhibitory NK cell receptors. Science 296, 1323–1326 (2002).

    Article  Google Scholar 

  6. Satoh, T. et al. PILRα is a herpes simplex virus-1 entry coreceptor that associates with glycoprotein B. Cell 132, 935–944 (2008).

    Article  Google Scholar 

  7. Cosman, D. et al. A novel immunoglobulin superfamily receptor for cellular and viral MHC class I molecules. Immunity 7, 273–282 (1997).

    Article  Google Scholar 

  8. Smith, H. R. et al. Recognition of a virus-encoded ligand by a natural killer cell activation receptor. Proc. Natl Acad. Sci. USA 99, 8826–8831 (2002).

    Article  Google Scholar 

  9. Kielczewska, A. et al. Ly49P recognition of cytomegalovirus-infected cells expressing H2-Dk and CMV-encoded m04 correlates with the NK cell antiviral response. J. Exp. Med. 206, 515–523 (2009).

    Article  Google Scholar 

  10. Samaridis, J. & Colonna, M. Cloning of novel immunoglobulin superfamily receptors expressed on human myeloid and lymphoid cells: structural evidence for new stimulatory and inhibitory pathways. Eur. J. Immunol. 27, 660–665 (1997).

    Article  Google Scholar 

  11. Nakajima, H., Samaridis, J., Angman, L. & Colonna, M. Human myeloid cells express an activating ILT receptor (ILT1) that associates with Fc receptor γ-chain. J. Immunol. 162, 5–8 (1999).

    Google Scholar 

  12. Brown, D., Trowsdale, J. & Allen, R. The LILR family: modulators of innate and adaptive immune pathways in health and disease. Tissue Antigens 64, 215–225 (2004).

    Article  Google Scholar 

  13. Hirayasu, K. & Arase, H. Functional and genetic diversity of leukocyte immunoglobulin-like receptor and implication for disease associations. J. Hum. Genet. 60, 703–708 (2015).

    Article  Google Scholar 

  14. Colonna, M. et al. A common inhibitory receptor for major histocompatibility complex class I molecules on human lymphoid and myelomonocytic cells. J. Exp. Med. 186, 1809–1818 (1997).

    Article  Google Scholar 

  15. Zheng, J. et al. Inhibitory receptors bind ANGPTLs and support blood stem cells and leukaemia development. Nature 485, 656–660 (2012).

    Article  Google Scholar 

  16. Atwal, J. K. et al. PirB is a functional receptor for myelin inhibitors of axonal regeneration. Science 322, 967–970 (2008).

    Article  Google Scholar 

  17. Canavez, F. et al. Comparison of chimpanzee and human leukocyte Ig-like receptor genes reveals framework and rapidly evolving genes. J. Immunol. 167, 5786–5794 (2001).

    Article  Google Scholar 

  18. Hirayasu, K. et al. Evidence for natural selection on leukocyte immunoglobulin-like receptors for HLA class I in Northeast Asians. Am. J. Hum. Genet. 82, 1075–1083 (2008).

    Article  Google Scholar 

  19. Bashirova, A. A. et al. Diversity of the human LILRB3/A6 locus encoding a myeloid inhibitory and activating receptor pair. Immunogenetics 66, 1–8 (2014).

    Article  Google Scholar 

  20. Lopez-Alvarez, M. R., Jones, D. C., Jiang, W., Traherne, J. A. & Trowsdale, J. Copy number and nucleotide variation of the LILR family of myelomonocytic cell activating and inhibitory receptors. Immunogenetics 66, 73–83 (2014).

    Article  Google Scholar 

  21. Ohtsuka, M. et al. NFAM1, an immunoreceptor tyrosine-based activation motif-bearing molecule that regulates B cell development and signaling. Proc. Natl Acad. Sci. USA 101, 8126–8131 (2004).

    Article  Google Scholar 

  22. Wang, J. & Arase, H. Regulation of immune responses by neutrophils. Ann. NY Acad. Sci. 1319, 66–81 (2014).

    Article  Google Scholar 

  23. Khweek, A. A. & Amer, A. Replication of Legionella pneumophila in human cells: why are we susceptible? Front. Microbiol. 1, 133 (2010).

    Article  Google Scholar 

  24. Black, W. J., Quinn, F. D. & Tompkins, L. S. Legionella pneumophila zinc metalloprotease is structurally and functionally homologous to Pseudomonas aeruginosa elastase. J. Bacteriol. 172, 2608–2613 (1990).

    Article  Google Scholar 

  25. Takai, T. Paired immunoglobulin-like receptors and their MHC class I recognition. Immunology 115, 433–440 (2005).

    Article  Google Scholar 

  26. Kelley, J., Walter, L. & Trowsdale, J. Comparative genomics of natural killer cell receptor gene clusters. PLoS Genet. 1, 129–139 (2005).

    Article  Google Scholar 

  27. Mestas, J. & Hughes, C. C. Of mice and not men: differences between mouse and human immunology. J. Immunol. 172, 2731–2738 (2004).

    Article  Google Scholar 

  28. Willcox, B. E., Thomas, L. M. & Bjorkman, P. J. Crystal structure of HLA-A2 bound to LIR-1, a host and viral major histocompatibility complex receptor. Nature Immunol. 4, 913–919 (2003).

    Article  Google Scholar 

  29. Allen, R. L., Raine, T., Haude, A., Trowsdale, J. & Wilson, M. J. Leukocyte receptor complex-encoded immunomodulatory receptors show differing specificity for alternative HLA-B27 structures. J. Immunol. 167, 5543–5547 (2001).

    Article  Google Scholar 

  30. Chen, Y. et al. Crystal structure of myeloid cell activating receptor leukocyte Ig-like receptor A2 (LILRA2/ILT1/LIR-7) domain swapped dimer: molecular basis for its non-binding to MHC complexes. J. Mol. Biol. 386, 841–853 (2009).

    Article  Google Scholar 

  31. Brezski, R. J. & Jordan, R. E. Cleavage of IgGs by proteases associated with invasive diseases: an evasion tactic against host immunity? MAbs 2, 212–220 (2010).

    Article  Google Scholar 

  32. Clark, R. A. & Nauseef, W. M. Isolation and functional analysis of neutrophils. Curr. Protoc. Immunol. 7, 7.23 (2001).

    Google Scholar 

  33. Nagai, H. & Roy, C. R. The DotA protein from Legionella pneumophila is secreted by a novel process that requires the Dot/Icm transporter. EMBO J. 20, 5962–5970 (2001).

    Article  Google Scholar 

  34. Homma, M., Chibana, H. & Tanaka, K. Induction of extracellular proteinase in Candida albicans. J. Gen. Microbiol. 139, 1187–1193 (1993).

    Article  Google Scholar 

  35. Shiroishi, M. et al. Efficient leukocyte Ig-like receptor signaling and crystal structure of disulfide-linked HLA-G dimer. J. Biol. Chem. 281, 10439–10447 (2006).

    Article  Google Scholar 

  36. Jiang, Y. et al. Transport of misfolded endoplasmic reticulum proteins to the cell surface by MHC class II molecules. Int. Immunol. 25, 235–246 (2013).

    Article  Google Scholar 

  37. Tiller, T. et al. Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning. J. Immunol. Methods 329, 112–124 (2008).

    Article  Google Scholar 

  38. Scotto-Lavino, E., Du, G. & Frohman, M. A. 5′ end cDNA amplification using classic RACE. Nature Protoc. 1, 2555–2562 (2006).

    Article  Google Scholar 

  39. Steurer, W. et al. Ex vivo coating of islet cell allografts with murine CTLA4/Fc promotes graft tolerance. J. Immunol. 155, 1165–1174 (1995).

    Google Scholar 

  40. Jin, H. et al. Autoantibodies to IgG/HLA class II complexes are associated with rheumatoid arthritis susceptibility. Proc. Natl Acad. Sci. USA 111, 3787–3792 (2014).

    Article  Google Scholar 

  41. Morita, S., Kojima, T. & Kitamura, T. Plat-E: an efficient and stable system for transient packaging of retroviruses. Gene. Ther. 7, 1063–1066 (2000).

    Article  Google Scholar 

  42. Moffat, J. F., Black, W. J. & Tompkins, L. S. Further molecular characterization of the cloned Legionella pneumophila zinc metalloprotease. Infect. Immun. 62, 751–753 (1994).

    Google Scholar 

  43. Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819–823 (2013).

    Article  Google Scholar 

  44. Emmendorffer, A., Hecht, M., Lohmann-Matthes, M. L. & Roesler, J. A fast and easy method to determine the production of reactive oxygen intermediates by human and murine phagocytes using dihydrorhodamine 123. J. Immunol. Methods. 131, 269–275 (1990).

    Article  Google Scholar 

  45. Coers, J., Vance, R. E., Fontana, M. F. & Dietrich, W. F. Restriction of Legionella pneumophila growth in macrophages requires the concerted action of cytokine and Naip5/Ipaf signalling pathways. Cell Microbiol. 9, 2344–2357 (2007).

    Article  Google Scholar 

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Acknowledgements

The authors thank K. Saito of the DNA-chip Development Center for Infectious Diseases (RIMD, Osaka University) for technical assistance, Y. Horiguchi (Department of Molecular Bacteriology, RIMD, Osaka University) for discussions, J. Matsuyama (Pathogenic Microbes Repository Unit, RIMD, Osaka University) for preparing various bacteria and J. Coers (Department of Molecular Genetics and Microbiology and Immunology, Duke University Medical Center) for providing a plasmid for the P. luminescens luxCDABE operon. This work was partially supported by JSPS KAKENHI (grant nos. 15K15131, 15H02545, 24115005, 26117714 and 26870334), the Practical Research Project for Allergic Diseases and Immunology from the Japan Agency for Medical Research and development, AMED, The Mochida Memorial Foundation for Medical and Pharmaceutical Research (to K.H.), The Uehara Memorial Foundation, the Terumo Life Science Foundation and the Tokyo Biochemical Research Foundation (to H.A.).

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K.H. performed experiments, analysed and discussed the data and wrote the manuscript. F.S. assisted with experiments, discussed the data and edited the manuscript. T.S. assisted with experimental design, discussed the data and edited the manuscript. K.S. assisted with experiments and discussed the data. N.A., K.O., T.Y., H.M., I.N., Y.N. and I.K. collected and analysed clinical samples and discussed the data. H.C. assisted with fungal experiments and discussed the data. T.K. and H.N. assisted with bacterial experiments and discussed the data. M.C. assisted with experiments and discussed the data. H.A. designed the study, analysed the data and wrote the manuscript.

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Correspondence to Hisashi Arase.

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Supplementary Figures 1-21 and Table 1 (PDF 4728 kb)

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Hirayasu, K., Saito, F., Suenaga, T. et al. Microbially cleaved immunoglobulins are sensed by the innate immune receptor LILRA2. Nat Microbiol 1, 16054 (2016). https://doi.org/10.1038/nmicrobiol.2016.54

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