Skip to main content

Thank you for visiting You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Correspondence
  • Published:

RNAiCut: automated detection of significant genes from functional genomic screens

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: RNAiCut results for insulin-triggered MAPK pathway screen in D. melanogaster4.


  1. Salwinski, L. et al. Nucleic Acids Res. 32, D449–D451 (2004).

    Article  CAS  Google Scholar 

  2. Stark, C. et al. Nucleic Acids Res. 34, D535–D539 (2006).

    Article  CAS  Google Scholar 

  3. König, R. et al. Cell 135, 49–60 (2008).

    Article  Google Scholar 

  4. Friedman, A. & Perrimon, N. Nature 444, 230–234 (2006).

    Google Scholar 

  5. The Gene Ontology Consortium. Nat. Genet. 25, 25–29 (2000).

Download references


We thank J. Bienkowska, M. Booker and K.G. Lu. I.M.K. was partially supported by the John Reed Fund.

Author information

Authors and Affiliations


Corresponding authors

Correspondence to Norbert Perrimon or Bonnie Berger.

Supplementary information

Supplementary Text and Figures

Supplementary Figures 1-12, Supplementary Tables 1-5, Supplementary Results and Supplementary Methods (PDF 849 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kaplow, I., Singh, R., Friedman, A. et al. RNAiCut: automated detection of significant genes from functional genomic screens. Nat Methods 6, 476–477 (2009).

Download citation

  • Issue Date:

  • DOI:

This article is cited by


Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing