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ProHits-viz: a suite of web tools for visualizing interaction proteomics data

Nature Methods volume 14, pages 645646 (2017) | Download Citation

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Acknowledgements

We are grateful to all members of the Gingras lab for feedback on ProHits-viz, particularly J.-Y. Youn and A.L. Couzens for comments during manuscript preparation. We would also like to thank D. Mellacheruvu for providing ProHits-viz-compatible downloadable files on the CRAPome website. We acknowledge funding from the Government of Canada through Genome Canada and the Ontario Genomics Institute (grant nos. OGI-088 and OGI-097 to A.-C.G. and L.P.), the Canadian Institutes of Health Research (to A.-C.G.; Foundation grant no. FDN143301); the US National Institutes of Health (to A.I.N. and A.-C.G.; grant no. 5R01GM94231); and the Singapore Ministry of Education (to H.C.; grant no. MOE T2-2-084). A.-C.G. is the Canada Research Chair in Functional Proteomics and the Lea Reichmann Chair in Cancer Proteomics.

Author information

Affiliations

  1. Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.

    • James D R Knight
    • , Gagan D Gupta
    • , Laurence Pelletier
    •  & Anne-Claude Gingras
  2. Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.

    • Hyungwon Choi
  3. Institute of Molecular and Cell Biology, Agency for Science, Technology, and Research, Singapore.

    • Hyungwon Choi
  4. Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.

    • Laurence Pelletier
    •  & Anne-Claude Gingras
  5. Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.

    • Brian Raught
  6. Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.

    • Brian Raught
  7. Department of Pathology, University of Michigan, Ann Arbor, Michigan, USA.

    • Alexey I Nesvizhskii
  8. Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.

    • Alexey I Nesvizhskii

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Competing interests

The authors declare no competing financial interests.

Corresponding author

Correspondence to Anne-Claude Gingras.

Integrated supplementary information

Supplementary information

PDF files

  1. 1.

    Supplementary Text and Figures

    Supplementary Figure 1 and Supplementary Methods

  2. 2.

    Supplementary Protocol

    ProHits-viz

Text files

  1. 1.

    Supplementary Table 1

    Sample data set for use with ProHits-viz.

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DOI

https://doi.org/10.1038/nmeth.4330

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