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TransVar: a multilevel variant annotator for precision genomics

Nature Methods volume 12, pages 10021003 (2015) | Download Citation

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Acknowledgements

We thank P. Ng and K. Shaw for critical feedback, as well as A. Johnson, A. Bailey, V. Holla, B. Litzenburger, J. Zhang and A. Chang for assistance. This work was supported in part by the US National Institutes of Health (grants CA172652, CA168394, CA083639, CA143883, UL1 TR000371, P50 CA083639, U54 CA112970 and P50 CA098258), the MD Anderson Cancer Center Sheikh Khalifa Ben Zayed Al Nahyan Institute of Personalized Cancer Therapy, the Bosarge Family Foundation, the Mary K. Chapman Foundation, the Michael & Susan Dell Foundation (honoring Lorraine Dell) and the National Cancer Institute Cancer Center (Support Grant P30 CA016672).

Author information

Author notes

    • Wanding Zhou
    •  & Tenghui Chen

    These authors contributed equally to this work.

Affiliations

  1. Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

    • Wanding Zhou
    • , Tenghui Chen
    • , Zechen Chong
    • , Mary A Rohrdanz
    • , James M Melott
    • , Chris Wakefield
    • , John N Weinstein
    •  & Ken Chen
  2. Khalifa Bin Zayed Al Nahyan Institute of Personalized Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

    • Jia Zeng
    • , Funda Meric-Bernstam
    •  & Gordon B Mills
  3. Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

    • John N Weinstein
    •  & Gordon B Mills
  4. Department of Investigational Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

    • Funda Meric-Bernstam
  5. Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

    • Funda Meric-Bernstam

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Competing interests

The authors declare no competing financial interests.

Corresponding author

Correspondence to Ken Chen.

Supplementary information

PDF files

  1. 1.

    Supplementary Tables and Notes

    Supplementary Tables 1–3 and Supplementary Notes 1 and 2

Zip files

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    Supplementary Software

    TransVar code, examples and documentation.

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DOI

https://doi.org/10.1038/nmeth.3622

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