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PSICQUIC and PSISCORE: accessing and scoring molecular interactions

Nature Methods volume 8, pages 528–529 (2011)Cite this article

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Figure 1: PSICQUIC and PSISCORE architecture.

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Acknowledgements

This study was supported by the European Commission under the Serving Life-science Information for the Next Generation contract 226073; Proteomics Standards Initiative and International Molecular Exchange contract FP7-HEALTH-2007-223411; Apoptosis Systems Biology Applied to Cancer and AIDS contract FP7-HEALTH-2007-200767; Experimental Network for Functional Integration contract LSHG-CT-2005-518254; German National Genome Research Network; German Research Foundation contract KFO 129/1-2; US National Institutes of Health grant R01GM071909; the Italian Association for Cancer Research; a Wellcome Trust Strategic Award to the European Molecular Biology Laboratory–European Bioinformatics Institute for Chemogenomics Databases; Grand Challenges in Global Health Research, the Canadian Institutes of Health Research, Foundation for the National Institutes of Health and Genome British Columbia; and a German Research Foundation–funded Cluster of Excellence for Multimodal Computing and Interaction. We thank organizers and sponsors of the Biohackathons 2008, 2009 and 2010 where part of the work was done.

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Author notes

  1. Bruno Aranda and Hagen Blankenburg: These authors contributed equally to this work.

Authors and Affiliations

  1. European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, UK

    Bruno Aranda, Samuel Kerrien, Jose M Dana, Marine Dumousseau, Anna Gaulton, Rafael C Jimenez, Jyoti Khadake, Gavin O'Kelly, Sandra Orchard, Sameer Velankar, Gerard J Kleywegt, John Overington & Henning Hermjakob

  2. Max Planck Institute for Informatics, Saarbrücken, Germany

    Hagen Blankenburg & Mario Albrecht

  3. Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada

    Fiona S L Brinkman

  4. Institute for Research in Biomedicine, Barcelona, Spain

    Arnaud Ceol

  5. Department of Biology, University of Rome Tor Vergata, Rome, Italy

    Arnaud Ceol, Eugenia Galeota & Gianni Cesareni

  6. Institut de Biologie et Chimie des Protéines, Unité Mixte de Recherche 5086, Centre National de la Recherche Scientifique–Université Lyon 1, Lyon, France

    Emilie Chautard & Sylvie Ricard-Blum

  7. Ontario Institute for Cancer Research, Toronto, Ontario, Canada

    Emilie Chautard & Guanming Wu

  8. Cancer Research Center, Centro de Investigación de Cáncer–Instituto de Biología Molecular y Celular del Cáncer, Consejo Superior de Investigaciones Científicas, Universidad de Salamanca, Salamanca, Spain

    Javier De Las Rivas & Carlos Prieto

  9. Istituto di Ricovero e Cura a Carattere Scientifico, Fondazione S. Lucia, Rome, Italy

    Eugenia Galeota & Gianni Cesareni

  10. J. Craig Venter Institute, Rockville, Maryland, USA

    Johannes Goll

  11. Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, British Columbia, Canada

    Robert E W Hancock

  12. The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada

    Ruth Isserlin, Magali Michaut & Gary D Bader

  13. Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands

    Jules Kerssemakers

  14. Animal and Bioscience Research Department, Animal and Grassland Research Innovation Centre, Teagasc, Ireland

    David J Lynn

  15. University of California, Trey Ideker Lab, San Diego, School of Medicine, La Jolla, California, USA

    Keiichiro Ono

  16. Institute of Biotechnology of León, León, Spain

    Carlos Prieto

  17. The Biotechnology Centre of Oslo, University of Oslo, Oslo, Norway

    Sabry Razick & Ian M Donaldson

  18. Department of Informatics, Biomedical Research Group, University of Oslo, Oslo, Norway

    Sabry Razick

  19. Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Kongens Lyngby, Denmark

    Olga Rigina

  20. Department of Energy Institute for Genomics and Proteomics, University of California, Los Angeles, Los Angeles, California, USA

    Lukasz Salwinski & David Eisenberg

  21. Faculty of Science, Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland

    Milan Simonovic

  22. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland

    Andrew Winter & Mike Tyers

  23. Department for Molecular Biosciences, University of Oslo, Oslo, Norway

    Ian M Donaldson

  24. Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California, USA

    David Eisenberg

  25. Howard Hughes Medical Institute, University of California, Los Angeles, California, USA

    David Eisenberg

  26. Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario, Canada

    Mike Tyers

Authors
  1. Bruno Aranda
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  2. Hagen Blankenburg
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  3. Samuel Kerrien
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  4. Fiona S L Brinkman
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  5. Arnaud Ceol
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  7. Jose M Dana
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  8. Javier De Las Rivas
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  9. Marine Dumousseau
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  10. Eugenia Galeota
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  11. Anna Gaulton
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  12. Johannes Goll
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  13. Robert E W Hancock
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  14. Ruth Isserlin
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  15. Rafael C Jimenez
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  16. Jules Kerssemakers
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  17. Jyoti Khadake
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  18. David J Lynn
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  19. Magali Michaut
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  20. Gavin O'Kelly
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  21. Keiichiro Ono
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  22. Sandra Orchard
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  23. Carlos Prieto
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  24. Sabry Razick
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  25. Olga Rigina
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  26. Lukasz Salwinski
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  27. Milan Simonovic
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  28. Sameer Velankar
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  29. Andrew Winter
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  30. Guanming Wu
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  31. Gary D Bader
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  32. Gianni Cesareni
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  33. Ian M Donaldson
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  34. David Eisenberg
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  35. Gerard J Kleywegt
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  36. John Overington
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  37. Sylvie Ricard-Blum
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  38. Mike Tyers
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  39. Mario Albrecht
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  40. Henning Hermjakob
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Corresponding author

Correspondence to Bruno Aranda.

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The authors declare no competing financial interests.

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Supplementary Table 1, Supplementary Notes 1–3 (PDF 2245 kb)

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Aranda, B., Blankenburg, H., Kerrien, S. et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nat Methods 8, 528–529 (2011). https://doi.org/10.1038/nmeth.1637

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