Abstract
THEMIS, a T cell–specific protein with high expression in CD4+CD8+ thymocytes, has a crucial role in positive selection and T cell development. THEMIS lacks defined catalytic domains but contains two tandem repeats of a distinctive module of unknown function (CABIT). Here we found that THEMIS directly regulated the catalytic activity of the tyrosine phosphatase SHP-1. This action was mediated by the CABIT modules, which bound to the phosphatase domain of SHP-1 and promoted or stabilized oxidation of SHP-1's catalytic cysteine residue, which inhibited the tyrosine-phosphatase activity of SHP-1. Deletion of SHP-1 alleviated the developmental block in Themis−/− thymocytes. Thus, THEMIS facilitates thymocyte positive selection by enhancing the T cell antigen receptor signaling response to low-affinity ligands.
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Change history
07 March 2017
In the version of this article initially published online, in the second sentence of the first paragraph of the third subsection of Results ('Deletion of Ptpn6 restores T cell development in Themis–/– mice'), the TCR chain is identified incorrectly as 'CD3'; that phrase should read "...antibody to the TCR invariant chain CD3ε (anti-CD3ε)..." instead. In the legend to Figure 3, the P value (< 0.005) was incorrect; the correct value is P < 0.05. Also, in the final sentence of that legend, the directions '(left)' and '(right)' are incorrect; that should read "Data are representative of (top) or from (bottom) four experiments..." instead. In Figure 4a, the numbers along the horizontal axes are incorrectly vertical; they should be horizontal instead. In Figure 4b, the labels along the vertical axes of the second and fourth plots incorrectly include '(%)'; the correct label is 'CD8SP cells (×106)' only. In the third sentence of the first paragraph of the fifth subsection of Results ('p-SHP-1 does not correspond with PTP activity'), the word 'of' is missing; this should read "The lower abundance of p-SHP-1..." instead. In the legend to Figure 5c, the antibody is incorrectly set off in commas; that should read "...immunoprecipitated with anti-SHP-1 from..." instead. Finally, Figure 7e is too large and should be the same size as all other panels in that figure. The errors have been corrected in the print, PDF and HTML versions of this article.
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Acknowledgements
We thank M. Muschen (University of California, San Francisco) for Ptpn6flox/flox mice; H. Gu (McGill University) for Grb2fl/fl mice; A. Ullrich (Max-Plank Institute, Germany) for Ptpn6 cDNA; L. Tautz (Sanford-Burnham Medical Research Institute) for Ptpn7 cDNA; J. Chernoff (Fox Chase Cancer Center) for plasmid encoding hemagglutinin-tagged PTPN1; and A. Bhandoola, R. Bosselut, R. Cornall, K. Pfeifer and A. Singer for critical review of the manuscript. Supported by the Intramural Research Program of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (1ZIAHD001803 to P.E.L.) and by the Intramural Research Program of the National Library of Medicine (L.A.).
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S.C., C.W., E.Z., J.L. and J.A. performed the experiments; S.C., R.L. and P.E.L. were responsible for the concept and experimental design; L.A. performed proteomics, protein modeling and evolutionary analysis for the CABIT module and CABIT proteins; and P.E.L. wrote the manuscript.
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Integrated supplementary information
Supplementary Figure 1 THEMIS selectively binds to SHP-1 and SHP-2.
a, THEMIS binds to SHP-1 but not PTPN1 or PTPN7. HEK-293 cells were transfected with plasmids encoding Flag-tagged THEMIS plus plasmids encoding SHP-1 (left), PTPN7 (middle) or PTPN1 (right). Cell lysates of transfected cells were analyzed directly by SDS-PAGE and immunoblotting (lower blots) or incubated with anti-Flag and immunoprecipitated proteins were subjected to SDS-PAGE then immunoblotted with the indicated antibodies (upper blots). One representative of two experiments. b, THEMIS binds to SHP-2. HEK-293 cells were transfected with plasmids encoding GST or GST-THEMIS. Lower blot is endogenous SHP-2. Upper blots show GST or GST-THEMIS pull downs blotted with anti-SHP-2 or anti-GST. One representative of two experiments. c,d,THEMIS CABIT modules bind to the SHP-1 PTP domain. Purified His-tagged CABIT-1 (THEMIS-1-260) or CABIT-2 (THEMIS-260-493) and GST-ΔSH2-SHP-1 proteins were incubated in GST binding buffer then incubated with glutathione beads. Bound proteins were subjected to SDS-PAGE and then blotted with anti-His. e, THEMIS-C-A binds SHP-1. CABIT-1 and CABIT-2 core domain cysteine residues were mutated to alanine (C-A). Plasmids encoding THEMIS, THEMIS-C-A and SHP-1 were transfected into HEK-293 cells in the combinations indicated. Flag (THEMIS) immunoprecipitated proteins (upper blot) or cell lysates (lower blot) were blotted for SHP-1. One representative of two experiments.
Supplementary Figure 2 Deletion of Ptpn6 ‘rescues’ T cell development in Themis-/- mice.
a, Flow cytometry analysis of thymocytes (left) or splenocytes (right) from mice of the indicated genotype. Thymus: two parameter plots show CD4 versus CD8 staining of total thymocytes or gated TCRhi thymocytes. Spleen: two parameter plots show CD4 versus CD8 staining of total spleen cells or CD62L versus CD44 staining of gated CD4 SP cells. Percentage of cells in the indicated quadrants are shown. b, Expression of THEMIS and SHP-1 in total thymocytes from the experiment shown. c, CD4 SP and CD8 SP T cell counts (x106) from thymus and spleen of the indicated mice (see a). Data shown are representative of 3 independent experiments. Error bars are SD, t-test 2-tailed, equal variance. *P<.05, **P<.01, ***P<.005. n.s., not significant (P >.05).
Supplementary Figure 3 THEMIS promotes or stabilizes active-site oxidation of SHP-1.
a, SHP-1 oxidation by pervanadate (PV) in vitro. Repeat of experiment shown in Fig. 5a. b, SHP-1 oxidation by PV in transfected HEK293 cells. Repeat of experiment shown in Fig. 5b. c, SHP-1 is rapidly oxidized in thymocytes lysed in buffer lacking PTP inhibitors. Lanes 1-3, thymocytes from the indicated mice were lysed on ice in degassed oxidation lysis buffer containing IAP-Bio to immediately label reduced PTP active site cysteines. Lanes 4-6, thymocytes were lysed on ice for 20 min in lysis buffer without PTP inhibitors then IAP-Bio was added. All lysates were incubated for 1 hr with anti-SHP-1 and immunoprecipitated proteins were analyzed by immunoblotting with Streptavidin (SA)-HRP to detect biotinylated protein. d, PTP activity of SHP-1 immunoprecipitated from thymocyte cell lysates. Cells were lysed in degassed PTP lysis buffer without PTP inhibitors for 20 min on ice, anti-SHP-1 was added and lysates were rotated for 1 h at 4°C. Immunoprecipitated SHP-1 was assayed for PTP activity as described in methods. e, SHP-1 oxidation in vivo. Repeat of experiment shown in Fig. 5d.
Supplementary Figure 4 Themis−/− signaling defects are revealed in the presence of ROS.
a, TCR stimulation does not induce ROS production in thymocytes. Freshly harvested thymocytes from B6 mice were unstimulated or stimulated for 5 min with anti-CD3+CD4, anti-CD3+CD28 or phorbol 12-myristate 13-acetate (PMA), lysed, and Reactive Oxygen Species (ROS) were measured by chemiluminescence assay. Results are from three experiments. b, Reduced induction of p-ZAP-70 in peptide stimulated Themis−/− thymocytes. Purified CD4+CD8+ thymocytes from MHCII (I-A)−/− mice expressing the OTII-TCR were rested for three hours at 5x106 cells/ml in RPMI at 37°C prior stimulation. Purified splenic B cells were pulsed for 2h at 37°C with 100ng/ml of OVA peptide (ISQAVHAAHAEINEAGR) or no peptide (NP) in RPMI supplemented with 5% FBS and 10mM HEPES. For stimulation, pulsed B cells and thymocytes were mixed at a ratio of 1/10 and spun at 5000 x g prior incubation at 37°C for the indicated time. Cells were lysed in Standard lysis buffer then subjected to SDS-PAGE and immunoblotted with the indicated antibodies. Data shown are representative of 2 independent experiments.
Supplementary Figure 5 Inhibition of SHP-1 by THEMIS is attenuated by the ROS scavenger N-acetyl-l-cysteine (NAC).
a, THEMIS-mediated inhibition of SHP-1 is attenuated by NAC in transfected HEK-293 cells. HEK-293 cells were transfected with plasmid encoding the protein tyrosine kinase SYK, a target of SHP-1, plus or minus plasmids encoding SHP-1 and THEMIS. Transfected cells were treated or not overnight with N-acetyl-cysteine (NAC) before lysis, SDS-PAGE and western blotting with the indicated antibodies. One representative of 2 experiments. b, THEMIS-mediated inhibition of SHP-1 in vitro is partially attenuated in the presence of NAC. SHP-1 was assayed for PTP activity in the presence or absence of THEMIS and NAC as indicated. PTP assay was performed as is described in Methods. Bar graphs show means +/- SD, t-test, two-tailed, equal variance. n=3 each. ***P<.005, ****P<.001.
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Choi, S., Warzecha, C., Zvezdova, E. et al. THEMIS enhances TCR signaling and enables positive selection by selective inhibition of the phosphatase SHP-1. Nat Immunol 18, 433–441 (2017). https://doi.org/10.1038/ni.3692
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DOI: https://doi.org/10.1038/ni.3692
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