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Natural variation in cardiac metabolism and gene expression in Fundulus heteroclitus

Nature Genetics volume 37, pages 6772 (2005) | Download Citation

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Abstract

Individual variation in gene expression is important for evolutionary adaptation1,2 and susceptibility to diseases and pathologies3,4. In this study, we address the functional importance of this variation by comparing cardiac metabolism to patterns of mRNA expression using microarrays. There is extensive variation in both cardiac metabolism and the expression of metabolic genes among individuals of the teleost fish Fundulus heteroclitus from natural outbred populations raised in a common environment: metabolism differed among individuals by a factor of more than 2, and expression levels of 94% of genes were significantly different (P < 0.01) between individuals in a population. This unexpectedly high variation in metabolic gene expression explains much of the variation in metabolism, suggesting that it is biologically relevant. The patterns of gene expression that are most important in explaining cardiac metabolism differ between groups of individuals. Apparently, the variation in metabolism seems to be related to different patterns of gene expression in the different groups of individuals. The magnitude of differences in gene expression in these groups is not important; large changes in expression have no greater predictive value than small changes. These data suggest that variation in physiological performance is related to the subtle variation in gene expression and that this relationship differs among individuals.

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Acknowledgements

We thank S. Hand for use of the pizeo-electric microarray printer and for critical but insightful thoughts and reading of the manuscript and G. Churchill, A. Whitehead, A. Clark and M. Q. Martindale for discussions and critical reading of the manuscript. This work was supported by the US National Science Foundation (Division of Ocean Sciences) and the US National Institutes of Health (National Heart, Lung, and Blood Institute and National Institute of Environmental Health Sciences).

Author information

Affiliations

  1. Department of Environmental & Molecular Toxicology, North Carolina State University, Raleigh, North Carolina 27695-7633, USA.

    • Marjorie F Oleksiak
  2. Division of Marine Biology and Fisheries, NIEHS Marine and Freshwater Biomedical Sciences Center, Rosenstiel School of Marine & Atmospheric Science, University of Miami, Miami, Florida, USA.

    • Jennifer L Roach
    •  & Douglas L Crawford

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Competing interests

The authors declare no competing financial interests.

Corresponding author

Correspondence to Douglas L Crawford.

Supplementary information

PDF files

  1. 1.

    Supplementary Table 1

    Metabolic rates for 16 male individuals utilizing glucose, fatty acid or lactate-ketones-alcohol.

  2. 2.

    Supplementary Table 2

    Summary table for all genes.

  3. 3.

    Supplementary Table 3

    Differences between populations in gene expression.

  4. 4.

    Supplementary Table 4

    Correlations for patterns of gene expression among individuals within a group and between group means.

  5. 5.

    Supplementary Table 5

    Genes and descriptions of enzymes in the three major metabolic pathways.

  6. 6.

    Supplementary Table 6

    Principal components for the three major metabolic pathways.

  7. 7.

    Supplementary Table 7

    Stepwise regression and associated statistics.

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DOI

https://doi.org/10.1038/ng1483

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