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Public data archives for genomic structural variation

Nature Genetics volume 42, pages 813–814 (2010)Cite this article

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Figure 1: The workflow for data submission and curation.

References

  1. Collins, F.S. et al. Science 282, 682–689 (1998).

    CAS  Article  Google Scholar 

  2. International Human Genome Sequencing Consortium. Nature 431, 931–945 (2004).

  3. Redon, R. et al. Nature 444, 444–454 (2006).

    CAS  Article  Google Scholar 

  4. Feuk, L., Carson, A.R. & Scherer, S.W. Nat. Rev. Genet. 7, 85–97 (2006).

    CAS  Article  Google Scholar 

  5. Eichler, E.E. et al. Nature 447, 161–165 (2007).

    CAS  Article  Google Scholar 

  6. She, X., Cheng, Z., Zöllner, S., Church, D.M. & Eichler, E.E. Nat. Genet. 40, 909–914 (2008).

    CAS  Article  Google Scholar 

  7. Emerson, J.J., Cardoso-Moreira, M., Borevitz, J.O. & Long, M. Science 320, 1629–1631 (2008).

    CAS  Article  Google Scholar 

  8. Wheeler, D.L. et al. Nucleic Acids Res. 36, D13–D21 (2008).

    CAS  Article  Google Scholar 

  9. Conrad, D.F. et al. Nature 464, 704–712 (2010).

    CAS  Article  Google Scholar 

  10. Walter, M.J. et al. Proc. Natl. Acad. Sci. USA 106, 12950–12955 (2009).

    CAS  Article  Google Scholar 

  11. Quinlan, A.R. et al. Genome Res. 20, 623–635 (2010).

    CAS  Article  Google Scholar 

  12. Alkan, C. et al. Nat. Genet. 41, 1061–1067 (2009).

    CAS  Article  Google Scholar 

  13. Kidd, J.M. et al. Nat. Methods 7, 365–371 (2010).

    CAS  Article  Google Scholar 

  14. Miller, D.T. et al. Am. J. Hum. Genet. 86, 749–764 (2010).

    CAS  Article  Google Scholar 

  15. Flicek, P. et al. Nucleic Acids Res. 38, D557–D562 (2010).

    CAS  Article  Google Scholar 

Download references

Author information

Affiliations

  1. National Center for Biotechnology Information, Bethesda, Maryland, USA

    Deanna M Church, Tam P Sneddon, John Lopez, John Garner, Justin Paschall, Michael DiCuccio & Eugene Yaschenko

  2. European Bioinformatics Institute, Cambridge, Hinxton, UK

    Ilkka Lappalainen, Jonathan Hinton, Michael Maguire & Paul Flicek

  3. The Centre for Applied Genomics, the Hospital for Sick Children, Toronto, Ontario, Canada

    Stephen W Scherer

  4. McLaughlin Centre and Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada

    Stephen W Scherer

  5. Department of Genetics and Pathology, Uppsala University, Uppsala, Sweden

    Lars Feuk

Authors
  1. Deanna M Church
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  2. Ilkka Lappalainen
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  3. Tam P Sneddon
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  4. Jonathan Hinton
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  5. Michael Maguire
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  6. John Lopez
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  7. John Garner
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  8. Justin Paschall
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  9. Michael DiCuccio
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  10. Eugene Yaschenko
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  11. Stephen W Scherer
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  12. Lars Feuk
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  13. Paul Flicek
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Contributions

D.M.C., S.W.S. and P.F. conceived of the databases and oversaw their development. I.L., T.P.S., J.H., M.M., J.L., J.G., J.P. and L.F. developed the databases and processed data to populate the databases. M.D. and E.Y. developed schemas and tools for the data model at NCBI.

Corresponding authors

Correspondence to Deanna M Church or Paul Flicek.

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The authors declare no competing financial interests.

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Church, D., Lappalainen, I., Sneddon, T. et al. Public data archives for genomic structural variation. Nat Genet 42, 813–814 (2010). https://doi.org/10.1038/ng1010-813

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