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Pairs of promoter pairs in a web of transcription

A new analysis has characterized a fundamental building block of complex transcribed loci. Constellations of core promoters can generally be reduced to pairs of divergent transcription units, where the distance between the pairs of transcription units correlates with constraints on genomic context, which in turn contribute to transcript fate.

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Figure 1: Transcription can originate divergently in nucleosome-free regions, which provide paired core promoters.

References

  1. Chen, Y. et al. Nat. Genet. 48, 984–994 (2016).

    Article  CAS  Google Scholar 

  2. Ntini, E. et al. Nat. Struct. Mol. Biol. 20, 923–928 (2013).

    Article  CAS  Google Scholar 

  3. Almada, A.E., Wu, X., Kriz, A.J., Burge, C.B. & Sharp, P.A. Nature 499, 360–363 (2013).

    Article  CAS  Google Scholar 

  4. Seila, A.C. et al. Science 322, 1849–1851 (2008).

    Article  CAS  Google Scholar 

  5. Core, L.J., Waterfall, J.J. & Lis, J.T. Science 322, 1845–1848 (2008).

    Article  CAS  Google Scholar 

  6. Core, L.J. et al. Nat. Genet. 46, 1311–1320 (2014).

    Article  CAS  Google Scholar 

  7. Scruggs, B.S. et al. Mol. Cell 58, 1101–1112 (2015).

    Article  CAS  Google Scholar 

  8. Duttke, S.H. et al. Mol. Cell 57, 674–684 (2015).

    Article  CAS  Google Scholar 

  9. Andersson, R. et al. Mol. Cell 60, 346–347 (2015).

    Article  CAS  Google Scholar 

  10. Duttke, S.H. et al. Mol. Cell 60, 348–349 (2015).

    Article  CAS  Google Scholar 

  11. Mayer, A. et al. Cell 161, 541–554 (2015).

    Article  CAS  Google Scholar 

Download references

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Correspondence to Craig D Kaplan.

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Kaplan, C. Pairs of promoter pairs in a web of transcription. Nat Genet 48, 975–976 (2016). https://doi.org/10.1038/ng.3649

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