Table 1: Comparison of the gene models in different species

From: The genome sequence of the orchid Phalaenopsis equestris

 AmAtBdGrSiMuOsPePbSbSmVvZm
Genome size (Mb)706.30119.70271.90775.20400.10473.00382.801086.20509.00738.50212.80486.202058.60
Gene (transcript) number26,84626,63726,41340,97638,12536,53633,12729,43142,34127,15922,28525,32978,483
Gene length (Mb)151.5050.8775.61101.86115.82131.3472.40283.85117.9479.9036.63155.24183.15
Coding sequence (Mb)25.4033.1033.9845.2541.5837.9733.4526.4256.9934.2525.5329.8262.16
Intron number82,937112,745106,747144,200124,169161,13295,37686,301180,965104,612100,572129,570188,877
All Intron length (Mb)126.6917.7641.6348.9054.7993.3738.95252.1960.9545.6611.14125.42121.00
Average intron length (bp)1,5281583903394415794082,922337436111968641
Length of TEs in introns (Mb)46.740.462.850.8711.042.551.37125.586.168.802.8147.2240.02
Total TEs (Mb)425.6623.8777.4379.43186.0331.9097.99667.90190.44435.33102.15239.961524.76
Total TE proportion (%)60.3019.9028.5010.2046.506.7025.6061.5037.4058.9048.0049.4074.10
TE proportion in introns (%)36.892.566.841.7820.152.733.5349.8010.1119.2725.1737.6533.07
  1. Am, Amborella trichopoda; At, Arabidopsis thaliana; Bd, Brachypodium distachyon; Gr, Gossypium raimondii; Si, Setaria italica; Mu, Musa acuminata; Os, Oryza sativa; Pe, Phalaenopsis equestris; Pb, Pyrus bretschneideri; Sb, Sorghum bicolor; Sm, Selaginella moellendorffii; Vv, Vitis vinifera; Zm, Zea mays. For all species, information on the data used can be found in the Supplementary Note and Supplementary Table 22. TEs were extracted from the original data set, and proportions were calculated accordingly.