Abstract
In industrialized countries the incidence of diseases caused by immune dysregulation has risen. Epidemiologic studies initially suggested this was connected to a reduction in the incidence of infectious diseases; however, an association with defects in immunoregulation is now being recognized. Effector TH1 and TH2 cells are controlled by specialized subsets of regulatory T cells. Some pathogens can induce regulatory cells to evade immune elimination, but regulatory pathways are homeostatic and mainly triggered by harmless microorganisms. Helminths, saprophytic mycobacteria, bifidobacteria and lactobacilli, which induce immunoregulatory mechanisms in the host, ameliorate aberrant immune responses in the setting of allergy and inflammatory bowel disease. These organisms cause little, if any, harm, and have been part of human microecology for millennia; however, they are now less frequent or even absent in the human environment of westernized societies. Deficient exposure to these 'old friends' might explain the increase in immunodysregulatory disorders. The use of probiotics, prebiotics, helminths or microbe-derived immunoregulatory vaccines might, therefore, become a valuable approach to disease prevention.
Key Points
-
The recent identification of regulatory T cells has prompted a paradigm shift in our understanding of immune regulation
-
Deficient activity of regulatory T cells has been demonstrated in individuals with immune-mediated diseases
-
Induction and regulation of mucosal immunity occurs primarily in gut-associated lymphoid tissues and the gut-draining mesenteric lymph nodes
-
Helminths, saprophytic mycobacteria and lactobacilli have all been shown to stimulate regulatory-T-cell responses
-
Reduced exposure to relatively harmless microorganisms in modern society could be associated with defects in the development of immunoregulatory pathways
Access options
Subscribe to Journal
Get full journal access for 1 year
$59.00
only $4.92 per issue
All prices are NET prices.
VAT will be added later in the checkout.
Tax calculation will be finalised during checkout.
Rent or Buy article
Get time limited or full article access on ReadCube.
from$8.99
All prices are NET prices.



References
- 1
Bach JF (2002) The effect of infections on susceptibility to autoimmune and allergic diseases. N Engl J Med 347: 911–920
- 2
Strachan DP et al. (1996) Family structure, neonatal infection, and hay fever in adolescence. Arch Dis Child 74: 422–426
- 3
Stene LC and Nafstad P (2001) Relation between occurrence of type 1 diabetes and asthma. Lancet 357: 607–608
- 4
Beasley R et al. (2000) Prevalence and etiology of asthma. J Allergy Clin Immunol 105: S466–S472
- 5
Gale EAM (2002) The rise of childhood type I diabetes in the 20th century. Diabetes 51: 3353–3361
- 6
Poser S et al. (1989) Increasing incidence of multiple sclerosis in South Lower Saxony, Germany. Neuroepidemiology 8: 207–213
- 7
Loftus EV (2004) Clinical epidemiology of inflammatory bowel disease: incidence, prevalence, and environmental influences. Gastroenterology 126: 1504–1517
- 8
Sawczenko A et al. (2001) Prospective survey of childhood inflammatory bowel disease in the British Isles. Lancet 357: 1093–1094
- 9
Gent AE et al. (1994) Inflammatory bowel disease and domestic hygiene in infancy. Lancet 343: 766–767
- 10
Marshall AL et al. (2004) Type 1 diabetes mellitus in childhood: a matched case control study in Lancashire and Cumbria, UK. Diabet Med 21: 1035–1040
- 11
Ponsonby AL et al. (2005) Exposure to infant siblings during early life and risk of multiple sclerosis. JAMA 293: 463–469
- 12
Uhlig T and Kvien TK (2005) Is rheumatoid arthritis disappearing? Ann Rheum Dis 64: 7–10
- 13
Nielsen HE et al. (1999) Epidemiology of juvenile chronic arthritis: risk dependent on sibship, parental income, and housing. J Rheumatol 26: 1600–1605
- 14
Stanwell-Smith R and Bloomfield S (2004) The hygiene hypothesis and its implications for home hygiene. A report issued by the International Scientific Forum on Home Hygiene (IFH). Milan: NextHealth
- 15
Benn CS et al. (2004) Cohort study of sibling effect, infectious diseases, and risk of atopic dermatitis during first 18 months of life. BMJ 328: 1223
- 16
Arshad SH et al. (2005) Early life risk factors for current wheeze, asthma, and bronchial hyperresponsiveness at 10 years of age. Chest 127: 502–508
- 17
Brandtzaeg P and Prydz H (1984) Direct evidence for an integrated function of J chain and secretory component in epithelial transport of immunoglobulins. Nature 311: 71–73
- 18
Johansen F-E and Brandtzaeg P (2004) Transcriptional regulation of the mucosal IgA system. Trends Immunol 25: 150–157
- 19
Brandtzaeg P and Johansen F-E (2005) Mucosal B cells: phenotypic characteristics, transcriptional regulation, and homing properties. Immunol Rev 206: 32–63
- 20
Crabbé PA et al. (1970) Immunohistochemical observations on lymphoid tissues from conventional and germ-free mice. Lab Invest 22: 448–457
- 21
Mowat AM (2003) Anatomical basis of tolerance and immunity to intestinal antigens. Nat Rev Immunol 3: 331–341
- 22
Helgeland L and Brandtzaeg P (2000) Development and function of intestinal B and T cells. Microbiol Ecol Health Dis 12 (Suppl 2): S110–S127
- 23
Korenblat PE et al. (1968) Immune responses of human adults after oral and parenteral exposure to bovine serum albumin. J Allergy 41: 226–235
- 24
Kraus TA et al. (2004) Failure to induce oral tolerance to a soluble protein in patients with inflammatory bowel disease. Gastroenterology 126: 1771–1778
- 25
Qiao L et al. (1996) Differential regulation of human T cell responsiveness by mucosal versus blood monocytes. Eur J Immunol 26: 922–927
- 26
van der Kleij D et al. (2002) A novel host–parasite lipid cross-talk. Schistosomal lyso-phosphatidylserine activates Toll-like receptor 2 and affects immune polarization. J Biol Chem 277: 48122–48129
- 27
van Eden W et al. (2005) Heat-shock proteins in T-cell regulation of chronic inflammation. Nature Rev Immunol 5: 318–330
- 28
McGuirk P et al. (1998) Compartmentalization of T cell responses following respiratory infection with Bordetella pertussis: hyporesponsiveness of lung T cells is associated with modulated expression of the co-stimulatory molecule CD28. Eur J Immunol 28: 153–163
- 29
McGuirk P et al. (2002) Pathogen-specific T regulatory 1 cells induced in the respiratory tract by a bacterial molecule that stimulates interleukin 10 production by dendritic cells: a novel strategy for evasion of protective T helper type 1 responses by Bordetella pertussis. J Exp Med 195: 221–231
- 30
Higgins SC et al. (2003) Toll-like receptor 4-mediated innate IL-10 activates antigen-specific regulatory T cells and confers resistance to Bordetella pertussis by inhibiting inflammatory pathology. J Immunol 171: 3119–3127
- 31
Viglietta V et al. (2004) Loss of functional suppression by CD4+CD25+ regulatory T cells in patients with multiple sclerosis. J Exp Med 199: 971–979
- 32
Arif S et al. (2004) Autoreactive T cell responses show proinflammatory polarization in diabetes but a regulatory phenotype in health. J Clin Invest 113: 451–463
- 33
Karlsson MR et al. (2004) Allergen-responsive CD+CD25+ regulatory T cells in children who have outgrown cow's milk allergy. J Exp Med 199: 1679–1688
- 34
Haddeland U et al. (2005) Putative regulatory T cells are impaired in cord blood from neonates with hereditary allergy risk. Pediatr Allergy Immunol 16: 104–112
- 35
van Amelsfort JM et al. (2004) CD4(+)CD25(+) regulatory T cells in rheumatoid arthritis: differences in the presence, phenotype, and function between peripheral blood and synovial fluid. Arthritis Rheum 50: 2775–2785
- 36
de Kleer IM et al. (2004) CD4+CD25bright regulatory T cells actively regulate inflammation in the joints of patients with the remitting form of juvenile idiopathic arthritis. J Immunol 172: 6435–6443
- 37
Zuany-Amorim C et al. (2002) Suppression of airway eosinophilia by killed Mycobacterium vaccae-induced allergen-specific regulatory T-cells. Nat Med 8: 625–629
- 38
Elliott DE et al. (2004) Heligmosomoides polygyrus inhibits established colitis in IL-10-deficient mice. Eur J Immunol 34: 2690–2698
- 39
Braat H et al. (2004) Immuno-modulating effect of filamentous hemagglutinine A of Bordetella pertussis in experimental colitis [abstract]. Gastroenterology 126 (Suppl 2): a284–a285
- 40
Guarner F and Malagelada JR (2003) Gut flora in health and disease. Lancet 361: 512–519
- 41
Sonnenburg JL et al. (2004) Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? Nat Immunol 5: 569–573
- 42
Suau A et al. (1999) Direct rDNA community analysis reveals a myriad of novel bacterial lineages within the human gut. Appl Environ Microbiol 65: 4799–4807
- 43
Derrien M et al. (2004) Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 54: 1469–1476
- 44
Bäckhed F et al. (2005) Host–bacterial mutualism in the human intestine. Science 307: 1915–1920
- 45
Zoetendal E et al. (2001) The host genotype affects the bacterial community in the human gastrointestinal tract. Microbial Ecol Health Dis 13: 129–134
- 46
- 47
Bartosch S et al. (2004) Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. Appl Environ Microbiol 70: 3575–3581
- 48
Schwiertz A et al. (2003) Development of the intestinal bacterial composition in hospitalized preterm infants in comparison with breast-fed, full-term infants. Pediatr Res 54: 393–399
- 49
Yamanaka T et al. (2003) Microbial colonization drives lymphocyte accumulation and differentiation in the follicle-associated epithelium of Peyer's patches. J Immunol 170: 816–822
- 50
Marteau P et al. (2004) Review article: gut flora and inflammatory bowel disease. Aliment Pharmacol Ther 20 (Suppl 4): 18–23
- 51
Seksik P et al. (2003) Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut 52: 237–242
- 52
Swidsinski A et al. (2002) Mucosal flora in inflammatory bowel disease. Gastroenterology 122: 44–54
- 53
Kleessen B et al. (2002) Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls. Scand J Gastroenterol 37: 1034–1041
- 54
Björkstén B et al. (1999) The intestinal microflora in allergic Estonian and Swedish 2-year-old children. Clin Exp Allergy 29: 342–346
- 55
Björkstén B et al. (2001) Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol 108: 516–520
- 56
Kalliomäki M et al. (2001) Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing. J Allergy Clin Immunol 107: 129–134
- 57
Summers RW et al. (2005) Trichuris suis therapy in Crohn's disease. Gut 54: 87–90
- 58
Kalliomäki M et al. (2001) Probiotics in primary prevention of atopic disease: a randomised placebo-controlled trial. Lancet 357: 1076–1079
- 59
Kato K et al. (2004) Randomized placebo-controlled trial assessing the effect of bifidobacteria-fermented milk on active ulcerative colitis. Aliment Pharmacol Ther 20: 1133–1141
- 60
Bron PA et al. (2004) Identification of lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol 186: 5721–5729
- 61
Telford G et al. (1998) The pseudomonas aeruginosa quorum-sensing signal molecule n-(3-oxododecanoyl)-l-homoserine lactone has immunomodulatory activity. Infect Immun 66: 36–42
- 62
Neish AS et al. (2000) Prokaryotic regulation of epithelial responses by inhibition of IkappaB-alpha ubiquitination. Science 289: 1560–1563
- 63
Kelly D et al. (2004) Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-gamma and RelA. Nat Immunol 5: 104–112
- 64
Christensen HR et al. (2002) Lactobacilli differentially modulate expression of cytokines and maturation surface markers in murine dendritic cells. J Immunol 168: 171–178
- 65
Borruel N et al. (2002) Increased mucosal tumour necrosis factor alpha production in Crohn's disease can be downregulated ex vivo by probiotic bacteria. Gut 51: 659–664
- 66
Menard S et al. (2004) Lactic acid bacteria secrete metabolites retaining anti-inflammatory properties after intestinal transport. Gut 53: 821–828
- 67
Chapat L et al. (2004) Lactobacillus casei reduces CD8+ T cell-mediated skin inflammation. Eur J Immunol 34: 2520–2528
- 68
von der Weid T et al. (2001) Induction by a lactic acid bacterium of a population of CD4+ T cells with low proliferative capacity that produce transforming growth factor beta and interleukin-10. Clin Diagn Lab Immunol 8: 695–701
- 69
Di Giacinto C et al. (2005) Probiotics ameliorate recurrent Th1-mediated murine colitis by inducing IL-10 and IL-10-dependent TGF-{beta}-bearing regulatory cells. J Immunol 174: 3237–3246
- 70
Maizels RM and Yazdanbakhsh M (2003) Immune regulation by helminth parasites: cellular and molecular mechanisms. Nat Rev Immunol 3: 733–744
- 71
Salas SD et al. (1990) Intestinal parasites in Central American immigrants in the United States. Arch Intern Med 150: 1514–1516
- 72
Cooper PJ et al. (2003) Reduced risk of atopy among school-age children infected with geohelminth parasites in a rural area of the tropics. J Allergy Clin Immunol 111: 995–1000
- 73
Scrivener S et al. (2001) Independent effects of intestinal parasite infection and domestic allergen exposure on risk of wheeze in Ethiopia: a nested case–control study. Lancet 358: 1493–1499
- 74
van den Biggelaar AHJ et al. (2004) Long-term treatment of intestinal helminths increases mite skin-test reactivity in Gabonese schoolchildren. J Infect Dis 189: 892–900
- 75
Wilson MS et al. (2005) Suppression of allergic airway inflammation by helminth-induced regulatory T cells. J Exp Med 202: 1199–1212
- 76
La Flamme AC et al. (2003) Schistosomiasis decreases central nervous system inflammation and alters the progression of experimental autoimmune encephalomyelitis. Infect Immun 71: 4996–5004
- 77
Zaccone P et al. (2003) Schistosoma mansoni antigens modulate the activity of the innate immune response and prevent onset of type 1 diabetes. Eur J Immunol 33: 1439–1449
- 78
Moreels TG et al. (2004) Concurrent infection with Schistosoma mansoni attenuates inflammation induced changes in colonic morphology, cytokine levels, and smooth muscle contractility of trinitrobenzene sulphonic acid induced colitis in rats. Gut 53: 99–107
- 79
Elliott DE et al. (2003) Exposure to schistosome eggs protects mice from TNBS-induced colitis. Am J Physiol 284: G385–G391
- 80
Summers RW et al. (2005) Trichuris suis therapy for active ulcerative colitis: a randomized controlled trial. Gastroenterology 128: 825–832
- 81
McKee AS and Pearce EJ (2004) CD25+CD4+ cells contribute to Th2 polarization during helminth infection by suppressing Th1 response development. J Immunol 173: 1224–1231
- 82
Adams VC et al. (2004) Mycobacterium vaccae induces a population of pulmonary antigen presenting cells that have regulatory potential in allergic mice. Eur J Immunol 34: 631–638
- 83
Rook GA et al. (2004) Mycobacteria and other environmental organisms as immunomodulators for immunoregulatory disorders. Springer Semin Immunopathol 25: 237–255
Author information
Affiliations
Corresponding author
Ethics declarations
Competing interests
Raphaëlle Bourdet-Sicard is employed by Danone Vitapole (Palaiseau, France), a company that produces probiotic products.
Rights and permissions
About this article
Cite this article
Guarner, F., Bourdet-Sicard, R., Brandtzaeg, P. et al. Mechanisms of Disease: the hygiene hypothesis revisited. Nat Rev Gastroenterol Hepatol 3, 275–284 (2006). https://doi.org/10.1038/ncpgasthep0471
Received:
Accepted:
Issue Date:
Further reading
-
BCG immunomodulation: From the ‘hygiene hypothesis’ to COVID-19
Immunobiology (2021)
-
Current Prospects of Nutraceuticals: A Review
Current Pharmaceutical Biotechnology (2020)
-
GAS6 signaling tempers Th17 development in patients with multiple sclerosis and helminth infection
PLOS Pathogens (2020)
-
Potential role of the gut microbiota in neuromyelitis optica spectrum disorder: Implication for intervention
Journal of Clinical Neuroscience (2020)
-
Correlation between antibiotic use in childhood and subsequent inflammatory bowel disease: a systematic review and meta-analysis
Scandinavian Journal of Gastroenterology (2020)