Fluorescence imaging is one of the most versatile and widely used visualization methods in biomedical research. However, tissue autofluorescence is a major obstacle confounding interpretation of in vivo fluorescence images. The unusually long emission lifetime (5–13 μs) of photoluminescent porous silicon nanoparticles can allow the time-gated imaging of tissues in vivo, completely eliminating shorter-lived (<10 ns) emission signals from organic chromophores or tissue autofluorescence. Here using a conventional animal imaging system not optimized for such long-lived excited states, we demonstrate improvement of signal to background contrast ratio by >50-fold in vitro and by >20-fold in vivo when imaging porous silicon nanoparticles. Time-gated imaging of porous silicon nanoparticles accumulated in a human ovarian cancer xenograft following intravenous injection is demonstrated in a live mouse. The potential for multiplexing of images in the time domain by using separate porous silicon nanoparticles engineered with different excited state lifetimes is discussed.
Fluorescence imaging has become a dominant in vitro and in vivo visualization method in biomedical research due to its high sensitivity, its high spatial resolution and its ease of use1,2. In vivo imaging of exogenous fluorescent probes that target diseased tissues has also shown promising results in clinical settings, such as the early detection of breast cancer, the outlining of tumour margins during surgery and endoscopic diagnosis of cancer micrometastasis1,3,4,5. However, the method is limited by tissue attenuation (scattering and absorption of the excitation or the emission light) and by tissue autofluorescence6,7. To minimize tissue attenuation effects, researchers have concentrated on near-infrared (NIR) fluorophores that are excited and emit in the spectral window between wavelengths of 650–950 nm8,9,10,11. However, tissue autofluorescence still produces a substantial background signal in this spectral range that severely limits the quality of images, especially when very low concentrations of the fluorescent probe accumulate at the target site12.
The endogenous fluorophores responsible for tissue autofluorescence have decay lifetimes of ~1–10 ns, depending on the type of tissue7. It has been proposed that late time-gating (that is, capturing the signal at a delayed time after excitation) could be used to image molecular or quantum dot imaging probes in the presence of this interference13,14,15,16,17,18. However, there is a lack of biocompatible NIR fluorophores with fluorescence lifetimes significantly greater than 1–10 ns, due to the quantum mechanical selection rules associated with organic molecules or direct gap semiconductors7,19.
Electrochemically etched porous silicon has shown considerable potential for in vivo applications due to its biodegradability, its low toxicity, its large specific capacity for drug loading and its intrinsic photoluminescence20,21,22,23,24,25,26,27. Silicon is an indirect gap semiconductor, which gives it a much longer-lived excited state than direct gap semiconductors such as CdS or CdSe28. This property translates to the scale of quantum dots, and nanoparticles derived from silicon tend to display radiative lifetimes on the order of 100 ns to several microseconds29,30,31. In contrast, CdS and CdSe excited states decay on much shorter timescales of a few nanoseconds to several tens of nanoseconds32. We recently demonstrated that NIR luminescent nanoparticles made of porous silicon (LPSiNPs) can be prepared that are biocompatible, have low systemic toxicity, and that accumulate in tumours in vivo and then degrade into components cleared by the kidneys33.
Here we show that the emission lifetime of these nanoparticles is sufficiently long (5–13 μs) to permit late time-gated (TG) imaging. The persistent emission from LPSiNPs is well differentiated in the time domain from signals associated with tissue autofluorescence or interfering organic chromophores. Delayed (late TG) images acquired 18 ns after excitation show clear signals from LPSiNPs, while the background fluorescence has disappeared due to its much shorter lifetime. An example of the utility of the method is demonstrated in the imaging of a human ovarian cancer xenograft in a mouse model, using LPSiNP probes introduced via intravenous injection.
Long emission lifetime of LPSiNPs
LPSiNPs were prepared by electrochemical etching of single-crystal Si in HF-containing electrolyte, followed by lifting-off of the porous layer, ultrasonic fracture, filtration of the resulting nanoparticles through a 0.22-μm filter membrane, and finally activation of photoluminescence by treatment in an aqueous solution following the published procedure33. The emission lifetime of the nanoparticles was controlled by adjusting the current density used in the electrochemical etch (Fig. 1a and Supplementary Figs S1,S2) and by post-etching chemical treatments (Supplementary Table S1). For the TG fluorescence imaging study presented here, the LPSiNPs were prepared using electrochemical etching at a current density of 200 mA cm−2 with a 2-week aqueous activation treatment. The nanoparticles were coated with 5 kDa polyethylene glycol (PEG) by reaction with a PEG-silane (PEG-LPSiNP, Fig. 1b). The mean hydrodynamic diameter of the PEG-LPSiNP formulation (measured by dynamic light scattering, DLS) was 168 nm, consistent with transmission electron microscopy measurements (Supplementary Fig. S3). The photoluminescence spectrum from the PEG-LPSiNPs (λex=370 nm) appeared at wavelengths between 600 and 900 nm (Fig. 1c), and the decay lifetime was 12 μs (λem=650 nm, 22 °C). This lifetime is >1,000 times larger than that typical of tissue autofluorescence or common fluorescent imaging dyes (Fig. 1d,e; Supplementary Figs S4,S5).
We first tested whether the long-lived photoluminescence from PEG-LPSiNPs could be separated from the fluorescence of conventional fluorophores in the time domain. To demonstrate the potential for practical applications, we used a commercial in vivo imaging system (eXplore Optix, ART Inc.). This instrument uses pulsed laser diodes and time-correlated single-photon counting to quantify fluorescence intensity and lifetime34. When imaged using a 470-nm excitation laser and a 590-nm longpass emission filter, the intensity of fluorescence from an aqueous solution 10 μg ml−1 of the common imaging dye Cy3.5 was comparable to the intensity of photoluminescence from an aqueous suspension 100 μg ml−1 in PEG-LPSiNPs (Fig. 2a). The laser we used operates at a repetition rate of 40 MHz, corresponding to a time window between pulses of 25 ns. The duration of an individual pulse from the laser is <0.1 ns. Although the Cy3.5 sample and the PEG-LPSiNP sample showed similar photoluminescence intensity when integrated over the entire 25 ns window (Fig. 2a), temporally integrating a 1 ns gate of the signal between 20.5 and 21.5 ns of the imaging window (18 and 19 ns post-pulse after correcting for synchronization) yielded a strong signal from the PEG-LPSiNP sample (50 times greater than background), while the signal from the Cy3.5 sample was at or below the noise level of the instrument (Fig. 2b,c). This improvement in image contrast is due to the rapid decay of fluorescence from the organic fluorophore (0.6 ns lifetime); the photoluminescence signal from the nanoparticle is essentially constant for the duration of the 25 ns period between pulses (Fig. 2b). As a result, only the PEG-LPSiNP sample was visible under late time-gating conditions (Fig. 2c).
In vivo TG imaging with PEG-LPSiNPs
We next investigated the possibility of eliminating tissue autofluorescence or interference from exogenous fluorophores when imaging PEG-LPSiNPs in vivo. A 20-μl aliquot of PEG-LPSiNPs (0.5 mg ml−1) and a 20-μl aliquot of Cy3.5 (0.02 mg ml−1) in normal saline were injected subcutaneously into the right and left shoulder of a nude mouse, respectively (Fig. 2d). When imaged under pseudo continuous wave (CW), or steady-state conditions (that is, no time gating), the two injection points had intensities comparable to the brighter autofluorescent tissues (Fig. 2e). However, the intensity-time decay curves of the relevant regions revealed a distinct persistence of signal only for the PEG-LPSiNPs (Fig. 2g). As shown in Fig 2g, the fast decay component (dominant at times <5 ns) from ubiquitous tissue autofluorescence appeared similar in all the body regions imaged: the PEG-LPSiNP injection site (T1), the Cy3.5 injection site (T2) and the background tissue region (T3). Only at the site of PEG-LPSiNP injection was residual photoluminescence intensity observed at times >5 ns, consistent with the longer lifetime of PEG-LPSiNPs. As predicted by the in vitro data of Fig. 2b, the signal from PEG-LPSiNPs was relatively constant between ~10 and 22 ns. To confirm this persistent signal at the injection site arose from PEG-LPSiNPs, we measured the full decay in vivo on a 100-μs timescale (Supplementary Fig. S5). In agreement with the results in Fig. 2g, both control tissue and tissue injected with PEG-LPSiNPs showed a prompt decay from tissue autofluorescence (<5 ns). However, only the tissue containing PEG-LPSiNPs showed a slow photoluminescence decay component, consistent with the in vitro measurements of PEG-LPSiNPs (Fig. 1d, Supplementary Fig. S5). Due to the slower radiative decay rate and low injection dose, this long-lived signal is weaker than the signals from Cy3.5 or from tissue autofluorescence, though it is easy to discern in the time-resolved data (Fig. 2g, T1). Application of the late time-gating algorithm (1 ns gate, 18 ns post-excitation) revealed a distinct spot in the PEG-LPSiNP injection point (T1), with negligible intensity from the Cy3.5 injection or from background tissue autofluorescence (Fig. 2f). Simple analysis of pixel intensities revealed a 20-fold increase in image contrast with the TG image relative to the CW image (Fig. 2e and f). It is possible that excitation crossover (bleed-through of the excitation source scattered from the tissues), a common problem for in vivo fluorescence imaging, may also contribute to the background signals in CW fluorescence images. As the pulse width of the excitation laser was <0.1 ns, the time-gating method used here was able to remove this potential interference.
PEG-LPSiNPs are distinguishable from fluorescent proteins
Genetically expressed fluorophores such as fluorescent proteins are widely used in biomedical research, so we next tested TG imaging of PEG-LPSiNPs in the human ovarian carcinoma 2008 cell line expressing the red fluorescent protein mCherry (2008-mCherry, Supplementary Fig. S6a). The fluorescence lifetime of mCherry is ~1.4 ns35, (verified in Supplementary Fig. S6b). In vitro imaging of PEG-LPSiNPs and 2008-mCherry cells showed that the signal from the nanoparticles was readily distinguishable using late TG imaging (Supplementary Fig. S6,c,d).
The PEG-LPSiNPs were also readily distinguishable from mCherry in vivo. A nude mouse bearing a 2008-mCherry tumour xenograft on each shoulder was imaged. The CW image displayed fluorescence from both tumours as well as strong tissue autofluorescence (Fig. 3a,b). The fluorescence signal from mCherry could not be distinguished from tissue autofluorescence due to their similar short fluorescence lifetimes (Fig. 3b). PEG-LPSiNPs (50 μl, 0.2 mg ml−1) were then injected into the tumour on the right shoulder of the mouse, and the mouse was imaged again under CW conditions. The tumour injected with nanoparticles was brighter than the control tumour in the CW image, but tissue autofluorescence and the signal from the control tumour were still clearly visible (Fig. 3c). In contrast, signals from both the control tumour and tissue autofluorescence were completely eliminated in the TG image (Fig. 3c). Ex vivo fluorescence images confirmed the presence of PEG-LPSiNPs in the tumour, and they demonstrated the effectiveness of TG imaging of PEG-LPSiNPs in ex vivo tissues (Fig. 3d–f).
TG imaging of tumours with PEG-LPSiNPs
Finally, we evaluated the potential of imaging tumours using intravenously injected circulating PEG-LPSiNPs as the photoluminescent probe. Intravenously injected nanoparticles can passively accumulate in tumour tissues due to the enhanced permeability and retention effect36,37,38. However, the efficiency of this process is low and generally only a small fraction of injected nanoparticles accumulates in a tumour39,40. This creates a challenge for in vivo optical imaging, because tissue autofluorescence can overwhelm the signals from the fluorescent probe. To evaluate the ability of late TG PEG-LPSiNPs to remove tissue autofluorescence in this situation, PEG-LPSiNPs (10 mg kg−1) were injected intravenously into a nude mouse bearing a human ovarian carcinoma SKOV3 xenograft tumour (Fig. 4a). Fluorescent images of the mouse were intermittently acquired over a 24-h time period post-injection. No signal from the nanoparticles was observed in either the CW or the TG images immediately after injection, because very few nanoparticles had accumulated in the tumour tissue (Fig. 4b). In addition, the lifetime of autofluorescence measured from the xenograft tumour was 2.2 ns, similar to the lifetime of the autofluorescence from healthy tissues measured in the vicinity of the tumour (2.3 ns). Therefore, no tumour contrast was detected in the TG image if the long-lived photoluminescent PEG-LPSiNP probe was not present. Weak photoluminescence was detected in the tumour 1 h after injection. However, the signal from the nanoparticles was too weak to be differentiated from tissue autofluorescence even with time-gating (Fig. 4c). As time progressed more PEG-LPSiNPs accumulated at the tumour, and the TG image obtained 4 h post-injection clearly revealed the site of the tumour (Fig. 4d). No contrast between tumour and normal tissue was observed in the CW image due to the pronounced autofluorescence signals. The intensity ratio between the tumour and normal tissues increased from ~1 in the CW image to 3 in the TD image (Fig. 4d). The signal from the tumour then decreased substantially 24 h post-injection (Fig. 4e) as the nanoparticles degraded and cleared from the host33. Ex vivo fluorescence images indicated that a small, but detectable quantity of PEG-LPSiNPs remained in the tumour 24 h post-injection (Supplementary Fig. S7).
Although the commercial time-domain imager used in the present study to identify and track the silicon-based nanoparticles has very good (sub-nanosecond) time resolution and excellent detector sensitivity, it is limited in the delay time that can be applied due to the repetition rate of the pulsed laser. A less sophisticated imaging system, with an ability to gate at a modest (>50 ns or even longer) delay time, is expected to yield even better image quality from PEG-LPSiNPs due to the long (microseconds) emission lifetime of this probe (Fig. 1d, Supplementary Figs S4,S5). For example, given two emitters with the same steady-state emission intensity—a long-lived emitter such as porous Si (12 μs lifetime, 10% quantum yield) and a prompt-emitting fluorophore such as Cy3.5 (0.6 ns lifetime, 15% quantum yield)—the TG (1 ns window, delay of 18 ns) emission intensity of the porous Si emitter is theoretically >108 times larger than the prompt emitter. This calculation assumes single-exponential decays and unitary instrument response functions. The theoretical contrast ratio rises very quickly with delay time; if imaged at a delay of 50 ns, it is >1031. Even if the porous Si probe is present at a concentration a million fold lower than the prompt-emitting fluorophores, the theoretical contrast ratio at 50 ns post-excitation is >1025. The potential sensitivity improvement obtained with later time-gating is especially helpful when a low dose of imaging probe is required.
Typically in time-resolved fluorescence imaging one must contend with temporally overlapping fluorescence decays from different fluorophores and unmix these signals based on lifetime contrast using model fitting (for example, multiexponential fits). However, late TG imaging using long-lifetime LPSiNPs avoids the temporal overlap of confounding tissue autofluorescence signals, eliminating the need to measure the complete fluorescence decay and unmix the signals. This approach provides a means of improving detection sensitivity and image contrast without sacrificing image resolution or generating false readings due to potential errors in model assumptions.
The wavelength distribution of the NIR emission spectrum of LPSiNPs is broader than many fluorescent probes, which places a limit on the use of LPSiNPs for multicolour imaging in the spectral domain. However, in contrast to conventional molecular probes, the decay lifetime of LPSiNPs can be readily tuned without changing the chemical nature of the probe, using a mild aqueous treatment (Supplementary Table S1). This provides the possibility of multiplex imaging in the time domain using multiple nanoparticle probes and various time gates. Furthermore, the slow change in emission lifetime that occurs upon degradation in aqueous media may allow the nanoparticle probe to report on its age in the system. In addition to their ability to provide high contrast images by time gating, the low toxicity and biodegradable characteristics of LPSiNPs overcomes the environmental and safety disadvantages of cytotoxic or non-biodegradable fluorescent probes currently used for in vitro or in vivo imaging.
Preparation of PEG-LPSiNPs
Luminescent porous silicon nanoparticles (LPSiNPs) were prepared following a previously described method33,41: (100)-oriented p-type single-crystal Si wafers (0.8–1.1 mΩ-cm resistivity, obtained from Siltronix, Inc.) were electrochemically etched by application of a constant current density of 200 mA cm−2 for 150 s in an electrolyte containing aqueous 48% hydrofluoric acid and ethanol in a 3:1 ratio. The resulting porous Si films were lifted from the Si substrate by application of a current pulse of 4 mA cm−2 for 250 s in a solution containing 3.3% (by volume) of 48% aqueous HF in ethanol. The porous Si film was fractured by ultrasound and filtered through a 0.22-μm membrane. Finally, the nanoparticles were mildly oxidized by soaking in deionized water for 2 weeks to activate photoluminescence. The activated nanoparticles were rinsed with deionized water three times by centrifugation. LPSiNP samples were prepared at the following etching current densities: 50 mA cm−2 for 300 s, 200 mA cm−2 for 150 s or 400 mA cm−2 for 150 s. The activation step involved soaking of the LPSiNPs in deionized water for various periods of time: 2, 6 or 10 weeks. To prepare PEG-LPSiNPs, a 0.6-ml aliquot of an ethanolic dispersion (0.5 mg ml−1 LPSiNPs) was mixed with a 0.5-ml aliquot of 6 mg ml−1 mPEG-Silane (MW 5 k, Laysan Bio, Inc.) in ethanol. The mixture was stirred for 16 h at room temperature. The nanoparticles were rinsed three times with ethanol and then three times with water. The samples were collected by centrifugation between each rinsing step.
Property measurements of LPSiNPs
Dynamic light scattering (Zetasizer Nano ZS90, Malvern Instruments) was used to determine the hydrodynamic size of the nanoparticles. Transmission electron microscope images were obtained with a FEI Tecnai G2 Sphera. Scanning electron microscope images were obtained using a Philips XL30 field emission ESEM operating in secondary electron emission mode. The photoluminescence (λex=370 and 460 nm long pass emission filter) spectra of LPSiNPs or PEG-LPSiNPs were obtained using a Princeton Instruments/Acton spectrometer fitted with a liquid nitrogen-cooled silicon charge-coupled device (CCD) detector. The photoluminescence decay data for aqueous dispersions of nanoparticles (in water or in tissue homogenates) were acquired using a Horiba Scientific FluoroLog-3 spectrofluorometer using a time-correlated single-photon counting method. A 456-nm NanoLED (Horiba Scientific) at 10 kHz repetition rate was used as the excitation source. The signal was collected at 650 or 700 nm at 22 °C. Although the decay curves for the PSiNPs were nonexponential, average decay lifetime is reported as the time at which the photoluminescence intensity of the nanoparticles decreased to l/e of the initial value after excitation. For the in vivo photoluminescence decays obtained on a longer (microseconds) timescale (Supplementary Fig. S5), spectra were acquired using a home-built system. A 10-Hz pulsed Nd:YAG laser (excitation at 355 nm, Quantel) was used as the source, and the PL signal was recorded with a high speed Si photo detector (DET110, Thorlabs) coupled to a 400-nm longpass filter and an oscilloscope (DPO3054, Tektronix).
Cell lines and mice
Two human ovarian carcinoma cell lines SKOV3 and 2008 were used in this study. In all, 2008 cells were transduced with lentiviral vectors containing the red fluorescent protein mCherry sequence (pLVX-mCherry, Clontech). The cells expressing mCherry (2008-mCherry) were sorted by flow cytometry and maintained in RPMI-1640 medium with 10% fetal calf serum (Invitrogen). Female nu/nu nude mice (Charles River) were maintained in specific pathogen-free facilities at the University of California, San Diego. Animal protocols were approved by the Institutional Animal Care and Use Committee.
In vitro and in vivo fluorescence imaging
A time-domain fluorescence imaging system eXplore Optix (ART Advanced Research Technologies, Inc.) was used to image fluorophore solutions and cell suspensions in vitro, and mice in vivo. A 470-nm laser with 40 MHz repetition rate was used as the excitation source and a 590-nm longpass filter was used as the emission filter for all imaging experiments.
For in vitro comparison of PEG-LPSiNPs and Cy3.5, an aliquot of PEG-LPSiNPs in aqueous dispersion (50 μl, 0.1 mg ml−1) was placed in a microtube, and an aliquot of Cy3.5 NHS ester (GE Healthcare) in aqueous solution (50 μl, 0.01 mg ml−1) was placed in a separate microtube. The microtubes were placed next to each other and imaged at the same time with the Optix imaging system. For in vivo imaging, PEG-LPSiNPs (20 μl, 0.5 mg ml−1) and Cy3.5 (20 μl, 0.02 mg ml−1) were injected subcutaneously into the right and left shoulder of a nude mouse, respectively. The mouse was imaged with the Optix imaging system immediately after injection.
For in vitro comparison of PEG-LPSiNPs with mCherry, aliquots of PEG-LPSiNPs (20 μl, 0.2 mg ml−1) and 2008-mCherry cell suspension (20 μl, ~1 million cells) were placed in separate microtubes and imaged at the same time with the Optix imaging system. For in vivo imaging, a nude mouse bearing a 2008-mCherry tumour (~0.7 cm) on each side of the shoulder was used. An aliquot of PEG-LPSiNPs dispersion (50 μl, 0.2 mg ml−1) was injected into the tumour on the right shoulder of the mouse, and the mouse was imaged with the Optix imaging system immediately after injection.
Nude mice bearing a SKOV3 tumour (~0.5 cm, left flank) were used for the in vivo tumour imaging study. A PEG-LPSiNPs saline dispersion was injected intravenously into the mouse at a dose of 10 mg kg−1 body mass through the tail vein. The mouse was imaged at several different time points for 24 h post-injection. The tumour and muscle in the vicinity of the tumour were harvested and imaged 24 h after injection.
Data analysis and time gating
The Optix imaging system data were analysed using OptiView (ART Advanced Research Technologies, Inc.) to calculate the in vivo decay lifetimes of the fluorophores or tissue autofluorescence. CW fluorescence images were obtained by reconstructing the photoluminescent signal collected within the full 25 ns imaging time-window from the data using MATLAB (MathWorks, Inc.). TG fluorescence images were generated by extracting and temporally integrating the photoluminescent signal collected between 20.5 and 21.5 ns of the imaging time-window (18–19 ns after the excitation pulse) from the data using a subroutine in the computer program MATLAB.
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We thank Professor Akif Tezcan and Professor Adah Almutairi for use of the fluorescence spectrometers and the UCSD IVISR facility for use of the eXplore Optix imaging system. We also gratefully acknowledge Dr Matheiu Lessard-Viger and Maria Angelella for their support with acquiring the photoluminescence lifetime measurements. This work was supported by Grants U54-CA 119335, 5-R01-CA124427, CA095298, CA152185, 1DP20D006499-01, P50CA128346 (D.J.H.) and 5R01EB015498 (D.J.M.) from the National Institutes of Health, by DARPA under Cooperative Agreement HR0011-13-2-0017, and by grant DMR-1210417 from the National Science Foundation. L.G. was partially supported by the UCSD HHMI/NIBIB Interfaces Graduate Training Program (HHMI Grant HHMI56005681). This work was performed in part at Harvard University Center for Nanoscale Systems (CNS), a member of the National Nanotechnology Infrastructure Network (NNIN), which is supported by the National Science Foundation under NSF award no. ECS-0335765. We thank Dr Arthur McClelland at CNS for assistance with some of the in vivo photoluminescence decay experiments.
The authors declare no competing financial interests.
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Gu, L., Hall, D., Qin, Z. et al. In vivo time-gated fluorescence imaging with biodegradable luminescent porous silicon nanoparticles. Nat Commun 4, 2326 (2013). https://doi.org/10.1038/ncomms3326
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