Figure 5 : Percentage distribution of alternative allele frequency differentiation for standing and new variations between weedy and cultivated rice.

From: Genomic variation associated with local adaptation of weedy rice during de-domestication

Figure 5

The AFD was measured by subtracting the alternative allele frequency of cultivated rice group from the corresponding weedy rice. (a) NX1-TEJ; (b) LN1–TEJ; (c) JS1–IND; (d) GD1–IND. The distributions for genome wide SNPs were shown on the top of each subfigure, and SNPs in the identified selected regions (Fig. 4b) are shown at the bottom. Percentages of standing variations are plotted in green histograms, and new mutations of japonica and indica type are depicted in orange and blue histograms, respectively.