Abstract
We report that simple glycoside donors can drastically shift the equilibria of glycosyltransferase-catalyzed reactions, transforming NDP-sugar formation from an endothermic to an exothermic process. To demonstrate the utility of this thermodynamic adaptability, we highlight the glycosyltransferase-catalyzed synthesis of 22 sugar nucleotides from simple aromatic sugar donors, as well as the corresponding in situ formation of sugar nucleotides as a driving force in the context of glycosyltransferase-catalyzed reactions for small-molecule glycodiversification. These simple aromatic donors also enabled a general colorimetric assay for glycosyltransfer, applicable to drug discovery, protein engineering and other fundamental sugar nucleotide–dependent investigations. This study directly challenges the general notion that NDP-sugars are 'high-energy' sugar donors when taken out of their traditional biological context.
Compound C16H18O8
(4-Methylumbelliferone)-β-D-glucopyranoside
Compound C12H15NO8
4-Nitrophenyl-β-D-glucopyranoside
Compound C12H15FO6
2-Fluorophenyl-β-D-glucopyranoside
Compound C12H15ClO6
2-Chlorophenyl-β-D-glucopyranoside
Compound C12H15BrO6
2-Bromophenyl-β-D-glucopyranoside
Compound C12H15IO6
2-Iodophenyl-β-D-glucopyranoside
Compound C12H15NO8
2-Nitrophenyl-β-D-glucopyranoside
Compound C12H14FNO8
2-Fluoro-4-nitrophenyl-β-D-glucopyranoside
Compound C12H14ClNO8
2-Chloro-4-nitrophenyl-β-D-glucopyranoside
Compound C12H16O6
Phenyl-β-D-glucopyranoside
Compound C12H15FO6
4-Fluorophenyl-β-D-glucopyranoside
Compound C12H15ClO6
4-Chlorophenyl-β-D-glucopyranoside
Compound C12H15BrO6
4-Bromophenyl-β-D-glucopyranoside
Compound C12H16O5S
S-Phenyl-1-thio-β-D-glucopyranoside
Compound C12H15NO7S
S-(4-Nitrophenyl)-1-thio-β-D-glucopyranoside
Compound C12H17NO5
N-Phenyl-β-D-glucopyranosylamine
Compound C12H16N2O7
N-(4-Nitrophenyl)-β-D-glucopyranosylamine
Compound C12H16N2O7
N-(3-Nitrophenyl)-β-D-glucopyranosylamine
Compound C12H16N2O7
N-(2-Nitrophenyl)-D-glucopyranosylamine
Compound C12H15N3O9
N-(3,5-Dinitrophenyl)-β-D-glucopyranosylamine
Compound C14H21NO6
N-(N-Benzyl-N-methoxy)-β-D-glucopyranosylamine
Compound C15H23NO6
N-(N-Benzyl-N-ethoxy)-β-D-glucopyranosylamine
Compound C20H25NO6
N-(N-Benzoxy-N-benzyl)-β-D-glucopyranosylamine
Compound C18H23NO6
N-(N-Methoxy-N-naphthalen-1-yl-methyl)-β-D-glucopyranosylamine
Compound C19H25NO6
N-(N-Ethoxy-N-naphthalen-1-yl-methyl)-β-D-glucopyranosylamine
Compound C24H27NO6
N-(N-Benzoxy-N-naphthalen-1-yl-methyl)-β-D-glucopyranosylamine
Compound C18H23NO6
N-(N-Methoxy-N-naphthalen-2-yl-methyl)-β-D-glucopyranosylamine
Compound C19H25NO6
N-(N-Ethoxy-N-naphthalen-2-yl-methyl)-β-D-glucopyranosylamine
Compound C24H27NO6
N-(N-Benzoxy-N-naphthalen-2-yl-methyl)-β-D-glucopyranosylamine
Compound C20H25NO6
N-(N-Benzhydryl-N-methoxy)-β-D-glucopyranosylamine
Compound C21H27NO6
N-(N-Benzhydryl-N-ethoxy)-β-D-glucopyranosylamine
Compound C26H29NO6
N-(N-Benzhydryl-N-benzoxy)-β-D-glucopyranosylamine
Compound C15H22N2O17P22-
Uridine 5'-diphospo-α-D-glucopyranoside
Compound C16H24N2O16P22-
Thymidine 5'-diphospo-α-D-glucopyranoside
Compound C12H13ClFNO7
(2-Chloro-4-nitrophenyl)-6-deoxy-6-fluoro-β-D-glucopyranoside
Compound C12H13BrClNO7
(2-Chloro-4-nitrophenyl)-6-bromo-6-deoxy-β-D-glucopyranose
Compound C12H14ClNO7S
(2-Chloro-4-nitrophenyl)-6-deoxy-6-thio-β-D-glucopyranoside
Compound C12H13ClN4O7
(2-Chloro-4-nitrophenyl)-6-azido-6-deoxy-β-D-glucopyranoside
Compound C11H12ClNO7
2-Chloro-4-nitrophenyl-β-D-xylopyranoside
Compound C12H14ClNO7
(2-Chloro-4-nitrophenyl)-2-deoxy-β-D-glucopyranoside
Compound C12H14ClNO7
(2-Chloro-4-nitrophenyl)-3-deoxy-β-D-glucopyranoside
Compound C12H14ClNO7
(2-Chloro-4-nitrophenyl)-4-deoxy-β-D-glucopyranoside
Compound C12H14ClNO7
(2-Chloro-4-nitrophenyl)-6-deoxy-β-D-glucopyranoside
Compound C12H14ClNO8
2-Chloro-4-nitrophenyl-β-D-mannopyranoside
Compound C12H14ClNO8
2-Chloro-4-nitrophenyl-β-D-allopyranoside
Compound C12H14ClNO8
2-Chloro-4-nitrophenyl-β-D-galactopyranoside
Compound C12H14ClNO8
2-Chloro-4-nitrophenyl-β-L-glucopyranoside
Compound C12H14ClNO7
2-Chloro-4-nitrophenyl-α-L-rhamnopyranoside
Compound C15H21FN2O16P22-
Uridine 5'-diphospo-6-deoxy-6-fluoro-α-D-glucopyranoside
Compound C16H23FN2O15P22-
Thymidine 5'-diphospo-6-deoxy-6-fluoro-α-D-glucopyranoside
Compound C15H21BrN2O16P22-
Uridine 5'-diphospo-6-deoxy-6-bromo-α-D-glucopyranoside
Compound C16H23BrN2O15P22-
Thymidine 5'-diphospo-6-deoxy-6-bromo-α-D-glucopyranoside
Compound C15H22N2O16P2S2-
Uridine 5'-diphospo-6-deoxy-6-thio-α-D-glucopyranoside
Compound C16H24N2O15P2S2-
Thymidine 5'-diphospo-6-deoxy-6-thio-α-D-glucopyranoside
Compound C15H21N5O16P22-
Uridine 5'-diphospo-6-deoxy-6-azido-α-D-glucopyranoside
Compound C16H23N5O15P22-
Thymidine 5'-diphospo-6-deoxy-6-azido-α-D-glucopyranoside
Compound C14H20N2O16P22-
Uridine 5'-diphospo-α-D-xylopyranoside
Compound C15H22N2O15P22-
Thymidine 5'-diphospo-α-D-xylopyranoside
Compound C15H22N2O16P22-
Uridine 5'-diphospo-2-deoxy-α-D-glucopyranoside
Compound C16H24N2O15P22-
Thymidine 5'-diphospo-2-deoxy-α-D-glucopyranoside
Compound C15H22N2O16P22-
Uridine 5'-diphospo-3-deoxy-α-D-glucopyranoside
Compound C16H24N2O15P22-
Thymidine 5'-diphospo-3-deoxy-α-D-glucopyranoside
Compound C15H22N2O16P22-
Uridine 5'-diphospo-4-deoxy-α-D-glucopyranoside
Compound C16H24N2O15P22-
Thymidine 5'-diphospo-4-deoxy-α-D-glucopyranoside
Compound C15H22N2O16P22-
Uridine 5'-diphospo-6-deoxy-α-D-glucopyranoside
Compound C16H24N2O15P22-
Thymidine 5'-diphospo-6-deoxy-α-D-glucopyranoside
Compound C15H22N2O17P22-
Uridine 5'-diphospo-α-D-allopyranoside
Compound C16H24N2O16P22-
Thymidine 5'-diphospo-α-D-allopyranoside
Compound C10H8O3
4-Methylumbelliferone
Compound C16H17FO7
(4-Methylumbelliferone)-6-deoxy-6-fluoro-β-D-glucopyranoside
Compound C16H17BrO7
(4-Methylumbelliferone)-6-bromo-6-deoxy-β-D-glucopyranoside
Compound C16H18O7S
(4-Methylumbelliferone)-6-deoxy-6-thio-β-D-glucopyranoside
Compound C16H17N3O7
(4-Methylumbelliferone)-6-azido-6-deoxy-β-D-glucopyranoside
Compound C15H16O7
(4-Methylumbelliferone)-β-D-xylopyranoside
Compound C16H18O7
(4-Methylumbelliferone)-2-deoxy-β-D-glucopyranoside
Compound C16H18O7
(4-Methylumbelliferone)-3-deoxy-β-D-glucopyranoside
Compound C16H18O7
(4-Methylumbelliferone)-4-deoxy-β-D-glucopyranoside
Compound C16H18O7
(4-Methylumbelliferone)-6-deoxy-β-D-glucopyranoside
Compound C16H18O8
(4-Methylumbelliferone)-β-D-allopyranoside
Compound C53H52Cl2N8O17
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-3-(Carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O22
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(β-D-Glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H61Cl2FN8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(6-Deoxy-6-fluoro-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H61BrCl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(6-Bromo-6-deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O21S
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(6-Deoxy-6-thio-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H61Cl2N11O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(6-Azido-6-deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C58H60Cl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(β-D-Xylopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(2-Deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(3-Deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(4-Deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O21
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(6-Deoxy-β-D-glucopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C59H62Cl2N8O22
(3S,6R,7R,11R,23S,26S,30aS,36R,38aR)-44-(β-D-Allopyranosyloxy)-3-(carbamoylmethyl)-10,19-dichloro-2,3,4,5,6,7,23,25,26,36,37,38,38a-tetradecahydro-7,22,28,30,32-pentahydroxy-6-(N-methyl-D-leucyl)-2,5,24,38,39-pentaoxo-1H,22H-23,36-(epiminomethano)-8,11:18,21-dietheno-13,16:31,35-di(metheno)[1,6,9]oxadiazacyclohexadecino[4,5-m][10,2,16]benzoxadiazacyclotetracosine-26-carboxylic acid
Compound C20H23FO10
(2-Fluorophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23ClO10
(2-Chlorophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23BrO10
(2-Bromophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23IO10
(2-Iodophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H22FNO12
(2-Fluoro-4-nitrophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23FO10
(4-Fluorophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23ClO10
(4-Chlorophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23BrO10
(4-Bromophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C20H23NO11S
S-(4-Nitrophenyl)-1-thio-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C8H9NO
Benzaldehyde-O-methyloxime
Compound C8H11NO
N-Methoxybenzylamine
Compound C9H11NO
Benzaldehyde-O-ethyloxime
Compound C9H13NO
N-Ethoxybenzylamine
Compound C14H13NO
Benzaldehyde-O-benzyloxime
Compound C14H15NO
N-Benzoxybenzylamine
Compound C12H11NO
1-Naphthaldehyde-O-methyloxime
Compound C12H13NO
N-Methoxy-1-naphthalenemethanamine
Compound C13H13NO
1-Naphthaldehyde-O-ethyloxime
Compound C13H15NO
N-Ethoxy-1-naphthalenemethanamine
Compound C18H15NO
1-Naphthaldehyde-O-benzyloxime
Compound C18H17NO
N-Benzoxy-1-naphthalenemethanamine
Compound C12H11NO
2-Naphthaldehyde-O-methyloxime
Compound C12H13NO
N-Methoxy-2-naphthalenemethanamine
Compound C13H13NO
2-Naphthaldehyde-O-ethyloxime
Compound C13H15NO
N-Ethoxy-2-naphthalenemethanamine
Compound C18H15NO
2-Naphthaldehyde-O-benzyloxime
Compound C18H17NO
N-Benzoxy-2-naphthalenemethanamine
Compound C14H13NO
Benzophenone-O-methyloxime
Compound C14H15NO
N-Methoxybenzhydrylamine
Compound C15H15NO
Benzophenone-O-ethyloxime
Compound C15H17NO
N-Ethoxybenzhydrylamine
Compound C20H17NO
Benzophenone-O-benzyloxime
Compound C20H19NO
N-Benzoxybenzhydrylamine
Compound C20H22ClNO12
(2-Chloro-4-nitrophenyl)-2,3,4,6-tetra-O-acetyl-β-D-glucopyranoside
Compound C14H19FO9
1,2,3,4-Tetra-O-acetyl-6-deoxy-6-fluoro-β-D-glucopyranose
Compound C18H19ClFNO10
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-acetyl-6-deoxy-6-fluoro-β-D-glucopyranoside
Compound C18H19BrClNO10
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-acetyl-6-bromo-6-deoxy-β-D-glucopyranose
Compound C12H16BrN3O7
1-Bromo-2,3,4-tri-O-acetyl-6-azido-6-deoxy-α-D-glucopyranose
Compound C18H19ClN4O10
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-acetyl-6-azido-6-deoxy-β-D-glucopyranoside
Compound C35H28ClNO11S
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-benzoyl-6-S-acetyl-6-deoxy-β-D-glucopyranoside
Compound C17H18ClNO10
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-acetyl-β-D-xylopyranoside
Compound C18H20ClNO10
(2-Chloro-4-nitrophenyl)-3,4,6-tri-O-acetyl-2-deoxy-β-D-glucopyranoside
Compound C18H20ClNO10
(2-Chloro-4-nitrophenyl)-2,4,6-tri-O-acetyl-3-deoxy-β-D-glucopyranoside
Compound C33H26ClNO10
(2-Chloro-4-nitrophenyl)-2,3,6-tri-O-benzoyl-4-deoxy-β-D-glucopyranoside
Compound C18H20ClNO10
(2-Chloro-4-nitrophenyl)-2,3,4-tri-O-acetyl-6-deoxy-β-D-glucopyranoside
Compound C17H16ClNO11
(2-Chloro-4-nitrophenyl)-4,6-di-O-acetyl-2,3-carbonyl-β-D-mannopyranoside
Compound C20H22ClNO12
(2-Chloro-4-nitrophenyl)-2,3,4,6-tetra-O-acetyl-β-D-allopyranoside
Compound C20H22ClNO12
(2-Chloro-4-nitrophenyl)-2,3,4,6-tetra-O-acetyl-β-D-galactopyranoside
Compound C20H22ClNO12
(2-Chloro-4-nitrophenyl)-2,3,4,6-tetra-O-acetyl-β-L-glucopyranoside
Compound C18H20ClNO10
2-Chloro-4-nitrophenyl-2,3,4-tri-O-acetyl-α-L-rhamnopyranose
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Acknowledgements
This manuscript is dedicated to the late C. Richard Hutchinson for his pioneering contributions to engineered natural product glycosylation. We thank the School of Pharmacy Analytical Instrumentation Center (University of Wisconsin–Madison) for analytical support and G.J. Williams (North Carolina State University) for materials and helpful discussion. R.W.G. is an American Foundation for Pharmaceutical Education Pre-Doctoral Fellow. J.S.T. is a University of Wisconsin H.I. Romnes Fellow and holds the Laura and Edward Kremers Chair in Natural Products. This work was supported by US National Institutes of Health grant AI52218.
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Affiliations
Pharmaceutical Sciences Division, School of Pharmacy, Wisconsin Center for Natural Products Research, University of Wisconsin–Madison, Madison, Wisconsin, USA.
- Richard W Gantt
- , Pauline Peltier-Pain
- , William J Cournoyer
- & Jon S Thorson
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Contributions
R.W.G., P.P.-P. and J.S.T. contributed to the experimental design. R.W.G., P.P.-P. and W.J.C. performed all experimental work. R.W.G., P.P.-P. and J.S.T. wrote and edited the manuscript.
Competing interests
J.S.T. is a co-founder of Centrose (Madison, Wisconsin, USA).
Corresponding author
Correspondence to Jon S Thorson.
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