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Temperature-sensitive control of protein activity by conditionally splicing inteins

Abstract

Conditional or temperature-sensitive (TS) alleles represent useful tools with which to investigate gene function. Indeed, much of our understanding of yeast has relied on temperature-sensitive mutations which, when available, also provide important insights into other model systems. However, the rarity of temperature-sensitive alleles and difficulty in identifying them has limited their use. Here we describe a system to generate temperature-sensitive alleles based on conditionally active inteins. We have identified temperature-sensitive splicing variants of the yeast Saccharomyces cerevisiae vacuolar ATPase subunit (VMA) intein inserted within Gal4 and transferred these into Gal80. We show that Gal80-inteinTS is able to efficiently provide temporal regulation of the Gal4/upstream activation sequence (UAS) system in a temperature-dependent manner in Drosophila melanogaster. Given the minimal host requirements necessary for temperature-sensitive intein splicing, this technique has the potential to allow the generation and use of conditionally active inteins in multiple host proteins and model systems, thereby widening the use of temperature-sensitive alleles for functional protein analysis.

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Figure 1: Generation of temperature-sensitive Gal4 molecules using conditionally splicing inteins.
Figure 3: Temperature-dependent control of Notch activity in wing imaginal discs.
Figure 2: Activity of inteinTS in Gal80 in yeast and D. melanogaster.

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References

  1. Tian, J. et al. A temperature-sensitive mutation in the nodal-related gene cyclops reveals that the floor plate is induced during gastrulation in zebrafish. Development 130, 3331–3342 (2003).

    Article  CAS  PubMed  Google Scholar 

  2. Harris, S.D., Cheng, J., Pugh, T.A. & Pringle, J.R. Molecular analysis of Saccharomyces cerevisiae chromosome I. On the number of genes and the identification of essential genes using temperature-sensitive-lethal mutations. J. Mol. Biol. 225, 53–65 (1992).

    Article  CAS  PubMed  Google Scholar 

  3. Paulus, H. Protein splicing and related forms of protein autoprocessing. Annu. Rev. Biochem. 69, 447–496 (2000).

    Article  CAS  PubMed  Google Scholar 

  4. Noren, C.J., Wang, J. & Perler, F.B. Dissecting the Chemistry of Protein Splicing and Its Applications. Angew. Chem. Int. Ed. Engl. 39, 450–466 (2000).

    Article  CAS  PubMed  Google Scholar 

  5. Poland, B.W., Xu, M.Q. & Quiocho, F.A. Structural insights into the protein splicing mechanism of PI-SceI. J. Biol. Chem. 275, 16408–16413 (2000).

    Article  CAS  PubMed  Google Scholar 

  6. Chong, S., Williams, K.S., Wotkowicz, C. & Xu, M.Q. Modulation of protein splicing of the Saccharomyces cerevisiae vacuolar membrane ATPase intein. J. Biol. Chem. 273, 10567–10577 (1998).

    Article  CAS  PubMed  Google Scholar 

  7. Adam, E. & Perler, F.B. Development of a positive genetic selection system for inhibition of protein splicing using mycobacterial inteins in Escherichia coli DNA gyrase subunit A. J. Mol. Microbiol. Biotechnol. 4, 479–487 (2002).

    CAS  PubMed  Google Scholar 

  8. Derbyshire, V. et al. Genetic definition of a protein-splicing domain: functional mini-inteins support structure predictions and a model for intein evolution. Proc. Natl. Acad. Sci. USA 94, 11466–11471 (1997).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Winston, F., Dollard, C. & Ricupero-Hovasse, S.L. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11, 53–55 (1995).

    Article  CAS  PubMed  Google Scholar 

  10. Hirata, R. & Anraku, Y. Mutations at the putative junction sites of the yeast VMA1 protein, the catalytic subunit of the vacuolar membrane H(+)-ATPase, inhibit its processing by protein splicing. Biochem. Biophys. Res. Commun. 188, 40–47 (1992).

    Article  CAS  PubMed  Google Scholar 

  11. Cooper, A.A., Chen, Y.J., Lindorfer, M.A. & Stevens, T.H. Protein splicing of the yeast TFP1 intervening protein sequence: a model for self-excision. EMBO J. 12, 2575–2583 (1993).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Yocum, R.R. & Johnston, M. Molecular cloning of the GAL80 gene from Saccharomyces cerevisiae and characterization of a gal80 deletion. Gene 32, 75–82 (1984).

    Article  CAS  PubMed  Google Scholar 

  13. Fukasawa, T. & Nogi, Y. Molecular genetics of galactose metabolism in yeast. Biotechnology 13, 1–18 (1989).

    CAS  PubMed  Google Scholar 

  14. Lee, T. & Luo, L. Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis. Neuron 22, 451–461 (1999).

    Article  CAS  PubMed  Google Scholar 

  15. Brand, A.H. & Perrimon, N. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118, 401–415 (1993).

    CAS  PubMed  Google Scholar 

  16. Lukacsovich, T. et al. Dual-tagging gene trap of novel genes in Drosophila melanogaster. Genetics 157, 727–742 (2001).

    CAS  PubMed  PubMed Central  Google Scholar 

  17. Thummel, C.S., Boulet, A.M. & Lipshitz, H.D. Vectors for Drosophila P-element-mediated transformation and tissue culture transfection. Gene 74, 445–456 (1988).

    Article  CAS  PubMed  Google Scholar 

  18. Muller, B. & Basler, K. The repressor and activator forms of Cubitus interruptus control Hedgehog target genes through common generic gli-binding sites. Development 127, 2999–3007 (2000).

    CAS  PubMed  Google Scholar 

  19. Nolo, R., Abbott, L.A. & Bellen, H.J. Senseless, a Zn finger transcription factor, is necessary and sufficient for sensory organ development in Drosophila. Cell 102, 349–362 (2000).

    Article  CAS  PubMed  Google Scholar 

  20. Irvine, K.D. Fringe, Notch, and making developmental boundaries. Curr. Opin. Genet. Dev. 9, 434–441 (1999).

    Article  CAS  PubMed  Google Scholar 

  21. Brennan, K., Klein, T., Wilder, E. & Arias, A.M. Wingless modulates the effects of dominant negative notch molecules in the developing wing of Drosophila. Dev. Biol. 216, 210–229 (1999).

    Article  CAS  PubMed  Google Scholar 

  22. Wu, W., Wood, D.W., Belfort, G., Derbyshire, V. & Belfort, M. Intein-mediated purification of cytotoxic endonuclease I-TevI by insertional inactivation and pH-controllable splicing. Nucleic Acids Res. 30, 4864–4871 (2002).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Gietz, R.D. & Sugino, A. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74, 527–534 (1988).

    Article  CAS  PubMed  Google Scholar 

  24. Bennetzen, J.L. & Hall, B.D. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase. J. Biol. Chem. 257, 3018–3025 (1982).

    CAS  PubMed  Google Scholar 

  25. Ausubel, F.M. et al. (eds.) Short Protocols in Molecular Biology, edn. 4. (Wiley, NY, 1999).

    Google Scholar 

  26. Heim, R. & Tsien, R.Y. Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer. Curr. Biol. 6, 178–182 (1996).

    Article  CAS  PubMed  Google Scholar 

  27. Robzyk, K. & Kassir, Y. A simple and highly efficient procedure for rescuing autonomous plasmids from yeast. Nucleic Acids Res. 20, 3790 (1992).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

We would like to especially thank Francine Perler for introducing us to the Intein system. We would also like to thank Aimée Dudley, Craig Kaplan, Erica Larschan and Mary Bryk as well as other members of the Winston lab for yeast strains and much technical advice. In addition we would like to thank Maggie Chang and Christians Villalta for technical assistance; Craig Micchelli for constructive suggestions and for fly stocks; Gyeong-Hun Baeg and Matthew Gibson for fly stocks; Susan Smith, Dan Curtis, Konrad Basler and Daisuke Yamamoto for plasmids; and Hugo Bellen and James Hopper for antibodies. M.P.Z. was a Special Fellow of the Leukemia and Lymphoma Society and is currently supported by the Emmy Noether program of the Deutsche Forschungsgemeinschaft. C.T. is supported by the Charles King Medical Foundation. N.P. is a Howard Hughes Investigator.

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Correspondence to Norbert Perrimon.

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The authors declare no competing financial interests.

Supplementary information

Supplementary Fig. 1

Mutations in inteinTS alleles. (PDF 108 kb)

Supplementary Table 1

Insertion context of inteinTS alleles. (PDF 37 kb)

Supplementary Table 2

Oligonucleotides used. (PDF 25 kb)

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Zeidler, M., Tan, C., Bellaiche, Y. et al. Temperature-sensitive control of protein activity by conditionally splicing inteins. Nat Biotechnol 22, 871–876 (2004). https://doi.org/10.1038/nbt979

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