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Human Proteinpedia enables sharing of human protein data

Nature Biotechnology volume 26, pages 164167 (2008) | Download Citation

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Acknowledgements

This project has been funded in part by a grant from the National Institutes of Health Roadmap initiative U54 RR020839 (J.S.B., P.A.C., R.J.C. and A.P.) and a contract N01-HV-28180 from the National Heart Lung and Blood Institute (J.V.E., R.J.C. and A.P.). The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organization imply endorsement by the United States Government.

Author information

Affiliations

  1. Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India.

    • Suresh Mathivanan
    • , Mukhtar Ahmed
    • , Raghothama Chaerkady
    • , Renu Goel
    • , HC Harsha
    • , Prashantha Hebbar
    • , Kumaran Kandasamy
    • , S Sujatha Mohan
    • , Anuradha Nalli
    • , J Daniel Navarro
    • , Balamurugan Periaswamy
    • , T S Keshava Prasad
    • , Kripa Shankari
    •  & K Shivakumar
  2. McKusick-Nathans Institute of Genetic Medicine and the Departments of Pathology and Oncology, Johns Hopkins University, Baltimore, Maryland 21205, USA.

    • Suresh Mathivanan
    • , Ramars Amanchy
    • , Raghothama Chaerkady
    • , HC Harsha
    • , Kumaran Kandasamy
    • , Henrik Molina
    • , Anuradha Nalli
    • , Balamurugan Periaswamy
    • , Jun Zhong
    •  & Akhilesh Pandey
  3. Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.

    • Suresh Mathivanan
    • , Ramars Amanchy
    • , HC Harsha
    • , Gerald Hart
    • , Kumaran Kandasamy
    • , Henrik Molina
    • , Anuradha Nalli
    • , Balamurugan Periaswamy
    • , Xiaoyue Wang
    • , Jun Zhong
    •  & Akhilesh Pandey
  4. Department of Biotechnology, Kuvempu University, Shankaraghatta 577451, Karnataka, India.

    • Suresh Mathivanan
    • , Kumaran Kandasamy
    • , Riaz Mohmood
    • , Balamurugan Periaswamy
    • , B Abdul Rahiman
    • , Y L Ramachandra
    •  & K Shivakumar
  5. Department of Chemistry and Biochemistry, Howard Hughes Medical Institute, University of Colorado, Boulder, Colorado 80309, USA.

    • Natalie G Ahn
  6. Biomedical Proteomics Research Group, Department of Structural Biology and Bioinformatics, Geneva University, Faculty of Medicine, CH-1211 Geneva 4, Switzerland.

    • Hainard Alexandre
    • , Denis F Hochstrasser
    • , Pierre Lescuyer
    •  & Jean-Charles Sanchez
  7. Department of Biological Chemistry, University of Colorado, Ann Arbor, Colorado 48109-0674, USA.

    • Philip C Andrews
    •  & Jayson Falkner
  8. The High Throughput Biology Center, Johns Hopkins University, Baltimore, Maryland 21205, USA.

    • Joel S Bader
  9. Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21205, USA.

    • Joel S Bader
  10. Calibrant Biosystems, 910 Clopper Road, Suite 220N, Gaithersburg, Maryland 20878, USA.

    • Brian M Balgley
  11. Cellzome AG, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

    • Marcus Bantscheff
    • , Gerard Drewes
    • , Bernhard Kuster
    •  & Jens Rick
  12. Research Center for Molecular Medicine (CeMM), Lazarettgasse 19/3, 1090 Vienna, Austria.

    • Keiryn L Bennett
    •  & Giulio Superti-Furga
  13. Royal Institute of Technology, School of Biotechnology, AlbaNova University Center, SE-106, 91 Stockholm, Sweden.

    • Erik Björling
    •  & Mathias Uhlen
  14. Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark.

    • Blagoy Blagoev
    • , Karin Hjernø
    • , Ole N Jensen
    • , Pia Hønnerup Jensen
    •  & Matthias Mann
  15. Departments of Pharmacology and Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.

    • Ron Bose
    •  & Philip A Cole
  16. GN Ramachandran Knowledge Center for Genome Informatics, Institute of Genomics and Integrative Biology, CSIR, Mall Road, Delhi 110 007, India.

    • Samir K Brahmachari
  17. Department of Pharmaceutical Chemistry, University of California-San Francisco, San Francisco, California 94143-0446, USA.

    • Alma S Burlingame
    • , Feixia Chu
    •  & Jonathan C Trinidad
  18. Centro de Investigación del Cáncer and Instituto de Biología Molecular y Celular del Cáncer. CSIC-University of Salamanca, Campus Unamuno, E-37007 Salamanca, Spain.

    • Xosé R Bustelo
    •  & Nieves Ibarrola
  19. Proteome Research Centre, UCD Conway Institute of Biomolecular and Biomedical Research, Belfield, Dublin 4, Ireland.

    • Gerard Cagney
    • , Michael J Dunn
    • , James McRedmond
    • , Kyla Pennington
    •  & Matthew Sullivan
  20. Department of Cell Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

    • Greg T Cantin
    • , Tao Xu
    •  & John R Yates
  21. Skirball Institute of Biomolecular Medicine and Department of Pharmacology, New York University School of Medicine, New York, New York 10016, USA.

    • Helene L Cardasis
    • , Thomas A Neubert
    •  & Vivekananda Shetty
  22. Danish Centre for Translational Breast Cancer Research (DCTB) and Department of Proteomics in Cancer, Institute of Cancer Biology, Danish Cancer Society, Strandboulevarden 49, DK-2100, Copenhagen, Denmark.

    • Julio E Celis
    •  & Pavel Gromov
  23. Cardiovascular Proteomics Center, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

    • Catherine E Costello
    •  & Mark McComb
  24. Department of Pharmacology and Molecular Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.

    • Robert J Cotter
  25. Department of Pathology, University of Michigan Medical School in Ann Arbor, 1301 Catherine 5240 Medical Science I, Ann Arbor, Michigan 48109-0602, USA.

    • David Crockett
    • , Kojo Elenitoba-Johnson
    •  & Megan S Lim
  26. Endocrinology and Metabolism Division, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, 15213, USA.

    • James P DeLany
  27. Departments of Urology and Pathology, The Johns Hopkins University School of Medicine, 600 North Wolfe Street, Baltimore, Maryland 21287, USA.

    • Angelo M De Marzo
    •  & James D Morgan
  28. Centre for Research in Mass Spectrometry and Department of Chemistry, York University, 4700 Keele Street, Toronto, Ontario M3J 1P3, Canada.

    • Leroi V DeSouza
    •  & K W Michael Siu
  29. Institute for Systems Biology, Seattle, Washington 98103, USA.

    • Eric W Deutsch
  30. Wageningen Centre for Food Sciences, Diedenweg 20, PO Box 557, 6700 AN Wageningen, The Netherlands.

    • Eric Dransfield
    •  & Thierry Sayd
  31. Health and Environment Unit, Laval University Medical Research Center (CHUL), Faculty of Medicine, 2705 Boul. Laurier, Quebec City, QC, G1V 4G2, Canada.

    • Arnaud Droit
    • , Pierre Gagné
    •  & Guy G Poirier
  32. Protana (now Transition Therapeutics), 101 College Street, Suite 220, Toronto, Ontario, M5G 1L7, Canada.

    • Rob M Ewing
  33. Infochromics, MaRS Discovery District, 101 College St., Toronto, Ontario M5G 1L7, Canada.

    • Rob M Ewing
  34. Department of Medicine, Johns Hopkins Bayview Proteomics Center, Johns Hopkins University, Baltimore, Maryland 21224.

    • Jennifer Van Eyk
    •  & Shi Jun Sheng
  35. Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.

    • Vitor Faca
    •  & Samir M Hanash
  36. GenWay Biotech, Inc., 6777 Nancy Ridge Drive, San Diego, California 92121, USA.

    • Xiangming Fang
  37. Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA.

    • Catherine Fenselau
    •  & Faith Hays
  38. The Ottawa Institute of Systems Biology, University of Ottawa, 451 Smyth Road, Ottawa, Ontario, K1H 8M5 Canada.

    • Daniel Figeys
    • , Jeffrey C Smith
    •  & Julian Vasilescu
  39. Department of Biomedical Sciences and Technologies, Faculty of Medicine, University of Milano, Via Fratelli Cervi 93, Segrate Milano, Italy.

    • Cecilia Gelfi
  40. Department of Biochemistry and Medical Protein Research, Faculty of Medicine and Health Sciences, Ghent University, A. Baertsoenkaai 3, B9000 Ghent, Belgium.

    • Kris Gevaert
    • , Kenny Helsens
    • , Lennart Martens
    •  & Joël Vandekerckhove
  41. Stem Cell Laboratory, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, Louisiana 70808, USA.

    • Jeffrey M Gimble
    •  & Michael Lefevre
  42. Cell Biology Core Facility, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, Louisiana 70808, USA.

    • Jeffrey M Gimble
  43. Department of Proteomics and Signal Transduction, Max-Planck-Institute for Biochemistry, D-82152 Martinsried, Germany.

    • Florian Gnad
    •  & Matthias Mann
  44. Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

    • William S Hancock
    •  & Billy Wu
  45. Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, 100850, China.

    • Fuchu He
    •  & Yunping Zhu
  46. Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.

    • Fuchu He
  47. Molecular Oncology, Independent Max-Planck-Research Group, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany.

    • Heiko Hermeking
    •  & Peter Jung
  48. South African National Bioinformatics Institute, University of the Western Cape Bellville 7535, South Africa.

    • Winston Hide
    • , Oliver Hofmann
    •  & Minna Lehvaslaiho
  49. Central Clinical Chemistry Laboratory, Geneva University Hospital, Geneva, Switzerland.

    • Denis F Hochstrasser
    •  & Michael Lefevre
  50. Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, California 95051, USA.

    • David M Horn
    •  & Christine A Miller
  51. Department of Pathology and Oncology, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, 401 North Broadway, Weinberg 2242, Baltimore, Maryland 21231-2410, USA.

    • Ralph H Hruban
  52. Protein Technology, Lund University, BMC D13, Lund, Sweden.

    • Peter James
    •  & Fredrik Levander
  53. Proteomic Core Facility, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, Louisiana 70808, USA.

    • Indu Kheterpal
  54. Department of Human Genome Technology, Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari Kisarazu Chiba 292-081,8 Japan.

    • Reiko F Kikuno
    •  & Osamu Ohara
  55. Division of Molecular Genome Analysis, German Cancer Research Center—DKFZ Heidelberg, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.

    • Ulrike Korf
    • , Christian Löbke
    • , Alexander Mehrle
    •  & Stefan Wiemann
  56. Department of Cell Biology, Max Planck Institute of Biochemistry, D-82152 Martinsried, Germany.

    • Roman Körner
  57. Department of Biochemistry, Yonsei Proteome Research Center and Biomedical Proteome Research Center, Yonsei University, Seoul 120-749, South Korea.

    • Min-Seok Kwon
    • , Hyoung-Joo Lee
    •  & Young-Ki Paik
  58. Department of Environmental Toxicology, University of California, Davis, California 95616-8588, USA.

    • Young-Jin Lee
    •  & Robert H Rice
  59. Lipoprotein Laboratory, Pennington Biomedical Research Center, Louisiana State University System, Baton Rouge, Louisiana 70808, USA.

  60. Department of Chemistry and Biochemistry and Department of Biological Chemistry, University of California Los Angeles, Los Angeles, California 90095, USA.

    • Joseph A Loo
    •  & Prasanna Ramachandran
  61. EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK.

    • Lennart Martens
  62. Human Genetics Research Group, IDIBAPS, Faculty of Medicine, University of Barcelona, Casanova 143, 08023, Barcelona, Spain.

    • Juan Martinez-Heredia
    • , Rafael Oliva
    •  & José-Manuel Vidal-Taboada
  63. Bioinformatics Program, University of Michigan, Ann Arbor, Michigan 48109, USA.

    • Rajasree Menon
    •  & David J States
  64. Mosaiques Diagnostics & Therapeutics AG, Hanover, Mellendorfer Strasse 7-9D-30625 Hannover, Germany.

    • Harald Mischak
    •  & Petra Zurbig
  65. Cancer Program, Hospital For Sick Children and McLaughlin Centre for Molecular Medicine, 101 College Street, East Tower, Toronto, Ontario, M5G 1L7 Canada.

    • Michael F Moran
  66. Banting and Best Department of Medical Research and Department of Molecular and Medical Genetics, University of Toronto, 112 College St., Toronto, Ontario M5G 1L6, Canada.

    • Michael F Moran
  67. Joint Proteomics Laboratory, Ludwig Institute for Cancer Research (Melbourne Branch) and The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3050 Victoria, Australia.

    • Robert Moritz
    •  & Richard J Simpson
  68. INRA, UR 370, Proteomics Platform, 63122 Saint Genès Champanelle, France.

    • Martine Morzel
  69. W.M. Keck FT-ICR Mass Spectrometry Laboratory, Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, USA.

    • David C Muddiman
  70. Laboratory for Immunogenomics, RIKEN Research Center for Allergy and Immunology, RIKEN Yokohama Institute, 2nd floor, North Research Building, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan.

    • Osamu Ohara
  71. Department of Internal Medicine, Center for Computational Medicine and Biology and Proteomics Alliance for Cancer Research, University of Michigan, Ann Arbor, Michigan 48109-2218, USA.

    • Gilbert S Omenn
  72. Medical Proteomics Laboratory, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639, Japan.

    • Masaaki Oyama
    •  & Sumio Sugano
  73. European Molecular Biology Laboratory, Cell Biology and Biophysics Programme Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

    • Rainer Pepperkok
  74. Center for Applied Proteomics and Molecular Medicine, George Mason University, Manassas, Virginia 20110, USA.

    • Emanuel F Petricoin
  75. Environmental Molecular Science Laboratory and Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

    • Samuel O Purvine
    •  & Richard D Smith
  76. Department of the Biological and Environmental Sciences, Division of Biochemistry, University of Helsinki, PO Box 56, Viikinkaari 9, FI-00014, Finland.

    • Ragna H Ronnholm
    •  & Maarit Takatalo
  77. Institute of Medical Technology, University of Tampere, Finn-Medi2, 5th floor, Biokatu 8, Tampere, FI-33014, Finland.

    • Johanna Salonen
    •  & Mauno Vihinen
  78. Department of Pathology, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, David Geffen School of Medicine at UCLA, Torrance, California 90502-2064, USA.

    • Beerelli Seshi
  79. Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India.

    • Ravi Sirdeshmukh
  80. Medical Molecular Biology Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand.

    • Visith Thongboonkerd
  81. Laboratory of Proteomics and Analytical Technologies, SAIC-Frederick Inc., NCI-Frederick, Frederick, Maryland 21702, USA.

    • Timothy D Veenstra
    •  & Ming Zhou
  82. Kennedy Institute of Rheumatology, Faculty of Medicine, Imperial College, South Kensington Campus, London SW7 2AZ, UK. pandey@jhmi.edu

    • Robin Wait

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About this article

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DOI

https://doi.org/10.1038/nbt0208-164

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