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Challenges in modeling the human gut microbiome

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Figure 1: The growth simulations for the AGORA and BiGG models.
Figure 2: The blocked reactions and reactions involved in thermodynamically infeasible loops in 100 models.
Figure 3


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We acknowledge funding from the Novo Nordisk Foundation (NNF10CC1016517) and the Knut and Alice Wallenberg Foundation.

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Correspondence to Jens Nielsen.

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The authors declare no competing financial interests.

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Supplementary Figures 1–11 and Supplementary Tables 1 and 2 (PDF 10901 kb)

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Babaei, P., Shoaie, S., Ji, B. et al. Challenges in modeling the human gut microbiome. Nat Biotechnol 36, 682–686 (2018).

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