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Strain recovery from metagenomes

Nature Biotechnology volume 33, pages 1041–1043 (2015)Cite this article

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Genome assembly of closely related strains present in very large metagenome data sets is enabled by a de novo pre-assembly algorithm.

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Figure 1: Generalized metagenomic workflow with and without LSA.

References

  1. Cleary, B. et al. Nat. Biotechnol. 33, 1053–1060 (2015).

    Article  CAS  Google Scholar 

  2. Shakya, M. et al. Environ. Microbiol. 15, 1882–1899 (2013).

    Article  CAS  Google Scholar 

  3. Sharon, I. et al. Genome Res. 23, 111–120 (2013).

    Article  CAS  Google Scholar 

  4. Iverson, V. et al. Science 335, 587–590 (2012).

    Article  CAS  Google Scholar 

  5. Bankevich, A. et al. J. Comput. Biol. 19, 455–477 (2012).

    Article  CAS  Google Scholar 

  6. Abubucker, S. et al. PLoS Comput. Biol. 8, e1002358 (2012).

    Article  CAS  Google Scholar 

  7. Alneberg, J. et al. Nat. Methods 11, 1144–1146 (2014).

    Article  CAS  Google Scholar 

  8. Imelfort, M. et al. PeerJ 2, e603 (2014).

    Article  Google Scholar 

  9. Pell, J. et al. Proc. Natl. Acad. Sci. USA 109, 13272–13277 (2012).

    Article  CAS  Google Scholar 

  10. Pesant, S. et al. Sci Data 2, 150023 (2015).

    Article  CAS  Google Scholar 

  11. Segata, N. et al. Nat. Methods 9, 811–814 (2012).

    Article  CAS  Google Scholar 

  12. Rimmer, A. et al. Nat. Genet. 46, 912–918 (2014).

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. C. Titus Brown is at the School of Veterinary Medicine, University of California at Davis, Davis, California, USA.,

    C Titus Brown

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  1. C Titus Brown
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Correspondence to C Titus Brown.

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Brown, C. Strain recovery from metagenomes. Nat Biotechnol 33, 1041–1043 (2015). https://doi.org/10.1038/nbt.3375

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