Response to Letter of Correspondence – Bastiaens et al.

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Figure 1: Silencing correlation– and relevance-based predictions.

Change history

  • 30 April 2015

    In the version of this article initially published, citations were given for Supplementary Software 1 and 2; these files have been removed from the website and the citations replaced by ones for figshare and GitHub (see supplementary information for explanation). The Software files have been available on figshare since publication and are now also available at GitHub (https://github.com/baruchbarzel/NatureBiotech-31-720), the link for which we have added to the paper. The changes have been made in the HTML and PDF versions of the article.

References

  1. 1

    Bastiaens, et al. Nat. Biotechnol. 33, 336–339 (2015).

  2. 2

    Barzel, B. & Barabási, A.-L. Nat. Biotechnol. 31, 720–725 (2013).

  3. 3

    Kholodenko, B.N. et al. Proc. Natl. Acad. Sci. USA 99, 12841–12846 (2002).

  4. 4

    Kholodenko, B.N. Nat. Cell Biol. 9, 247–249 (2007).

  5. 5

    Kholodenko, B.N., Yaffe, M.B. & Kolch, W. Sci. Signal. 5, re1 (2012).

  6. 6

    Marbach, D. et al. Nat. Methods 9, 796–804 (2012).

  7. 7

    Butte, A.J. & Kohane, I.S. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pacific Symposium on Biocomputing 5, 415–426 (2000).

  8. 8

    Margolin, A.A. et al. BMC Bioinformatics 7, S7 (2006).

  9. 9

    Faith, J.J. et al. PLoS Biol. 5, 1 (2007).

  10. 10

    Feizi, S. et al. Nat. Biotechnol. 31, 726–733 (2013).

  11. 11

    Wright, S. J. Agric. Res. 20, 557–585 (1921).

  12. 12

    Davis, J. & Goadrich, M. The relationship between Precision-Recall and ROC curves. in Proceeding of the 23rd International Conference on Machine Learning (ACM, Pittsburg, Pennsylvania, 2006).

  13. 13

    Gulbahce, N. et al. PLoS Comput. Biol. 8, e1002531 (2012).

  14. 14

    Barzel, B. & Biham, O. Phys. Rev. E 80, 046104 (2009).

  15. 15

    Barzel, B. & Barabási, A.-L. Nat. Phys. 9, 673–681 (2013).

  16. 16

    Maslov, S. & Ispolatov, I. Proc. Natl. Acad. Sci. USA 104, 13655–13660 (2007).

  17. 17

    Maslov, S. & Ispolatov, I. New J. Phys. 9, 273–283 (2007).

  18. 18

    Yan, K.-K., Walker, D. & Maslov, S. Phys. Rev. Lett. 101, 268102 (2008).

  19. 19

    Kauffman, S. Physica A 340, 733–740 (2004).

  20. 20

    Furusawa, C. & Kaneko, K. Phys. Rev. Lett. 90, 088102 (2003).

  21. 21

    Lu, T. et al. BMC Bioinformatics 6, 37–49 (2005).

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Author information

Correspondence to Albert-László Barabási.

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The authors declare no competing financial interests.

Supplementary information

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Supplementary Notes 1–3 (PDF 833 kb)

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Barzel, B., Barabási, A. Response to Letter of Correspondence – Bastiaens et al.. Nat Biotechnol 33, 339–342 (2015) doi:10.1038/nbt.3184

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