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Ballgown bridges the gap between transcriptome assembly and expression analysis

Nature Biotechnology volume 33, pages 243246 (2015) | Download Citation

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Acknowledgements

The authors would like to thank P.A.C. 't Hoen and T. Lappalainen for providing QC data and assistance with contacting ArrayExpress. They would also like to acknowledge C. Trapnell for helpful conversations about Cufflinks architecture and results. J.T.L., G.P. and B.L. were partially supported by US National Institutes of Health 1R01GM105705, and A.C.F. is supported by a Hopkins Sommer Scholarship.

Author information

Affiliations

  1. Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.

    • Alyssa C Frazee
    • , Andrew E Jaffe
    • , Ben Langmead
    • , Steven L Salzberg
    •  & Jeffrey T Leek
  2. Center for Computational Biology, Johns Hopkins University, Baltimore, Maryland, USA.

    • Alyssa C Frazee
    • , Geo Pertea
    • , Andrew E Jaffe
    • , Ben Langmead
    • , Steven L Salzberg
    •  & Jeffrey T Leek
  3. McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

    • Geo Pertea
    •  & Steven L Salzberg
  4. Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, Maryland, USA.

    • Andrew E Jaffe
  5. Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA.

    • Ben Langmead
    •  & Steven L Salzberg

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Competing interests

The authors declare no competing financial interests.

Corresponding author

Correspondence to Jeffrey T Leek.

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DOI

https://doi.org/10.1038/nbt.3172

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