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Multi-omic data analysis using Galaxy

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References

  1. 1

    Lappalainen, T. et al. Nature 501, 506–511 (2013).

    CAS  Article  Google Scholar 

  2. 2

    Junot, C., Fenaille, F., Colsch, B. & Becher, F. Mass Spectrom. Rev. 33, 471–500 (2013).

    Article  Google Scholar 

  3. 3

    Low, T.Y. et al. Cell Reports 5, 1469–1478 (2013).

    CAS  Article  Google Scholar 

  4. 4

    Castellana, N.E. et al. Mol. Cell. Proteomics 13, 157–167 (2014).

    CAS  Article  Google Scholar 

  5. 5

    Armengaud, J. Environ. Microbiol. 15, 12–23 (2013).

    CAS  Article  Google Scholar 

  6. 6

    Martinez-Outschoorn, U.E. et al. Cell Cycle 10, 1271–1286 (2011).

    CAS  Article  Google Scholar 

  7. 7

    Palsson, B. & Zengler, K. Nat. Chem. Biol. 6, 787–789 (2010).

    Article  Google Scholar 

  8. 8

    Goecks, J., Nekrutenko, A. & Taylor, J. Genome Biol. 11, R86 (2010).

    Article  Google Scholar 

  9. 9

    Hull, D. et al. Nucleic Acids Res. 34, W729–W732 (2006).

    CAS  Article  Google Scholar 

  10. 10

    Jagla, B., Wiswedel, B. & Coppee, J.Y. Bioinformatics 27, 2907–2909 (2011).

    CAS  Article  Google Scholar 

  11. 11

    Hunter, A.A., Macgregor, A.B., Szabo, T.O., Wellington, C.A. & Bellgard, M.I. Source Code Biol. Med. 7, 1 (2012).

    Article  Google Scholar 

  12. 12

    Kacsuk, P. et al. J. Grid Comput. 10, 601–630 (2012).

    Article  Google Scholar 

  13. 13

    Abouelhoda, M., Issa, S.A. & Ghanem, M. BMC Bioinformatics 13, 77 (2012).

    Article  Google Scholar 

  14. 14

    Goble, C.A. et al. Nucleic Acids Res. 38, W677–W682 (2010).

    CAS  Article  Google Scholar 

Download references

Acknowledgements

The authors gratefully acknowledge funding for P.L.H. from the Netherlands Bioinformatics Centre SP5.12.2.1 Bioassist and 2.2.3 Biorange and the Netherlands Proteomics Centre NPC II E4.2 programs. P.D.M. acknowledges support from the Netherlands Bioinformatics Centre and Netherlands Proteomics Centre (NPC-GM WP3.2) J.B. and J.L. are supported by grants from the Swedish Research Council, Bioinformatics Infrastructure for Life Sciences (BILS) Sweden, Swedish Cancer Foundation and EU FP7 GlycoHit Project. P.L. acknowledges support from the Consortium for Improving Plant Yield (CIPY) and the 7th Framework Program FUEL4ME (FP7-ENERGY-2012-1-2stage grant number 308983). P.D.J., J.M.C. and T.J.G. acknowledge support from US National Science Foundation grant 1147079.

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Boekel, J., Chilton, J., Cooke, I. et al. Multi-omic data analysis using Galaxy. Nat Biotechnol 33, 137–139 (2015). https://doi.org/10.1038/nbt.3134

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