Table 1 Number of canonical EMS mutations detected in seven rice mutants

From: Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers

   Without reference sequence (NIKS analysisa) With reference sequence (MutMap analysisb,c)
Sample Coveragec Without linkage With linkage Without linkage
Hit1917-pl1 12.5 21 (4) 10 (7) 24 (14)
Hit0813-pl2 13.7 20 (5) 7 (5) 10 (5)
Hit1917-sd 16.6 7 (4) 9 (6) 10 (7)
Hit0746-sd 14.0 16 (1) 3 (4) 13 (5)
Hit5500-sd 13.2 12 (6) 4 (4) 9 (6)
Hit5814-sd 14.2 10 (5) 4 (4) 4 (4)
Hit5243-sm 14.1 19 (13) 11 (11) 21 (17)
  1. aNumbers include all mutations that have been identified in more than one comparison. Values in brackets describe the number of mutations that appeared to be completely homozygous.
  2. bValues describe mutations with 90% mutant allele frequency. Values in brackets describe the number of mutations that appeared to be completely homozygous.
  3. cValues are taken from reference 10.