Letter | Published:

A bimodular mechanism of calcium control in eukaryotes

Nature volume 491, pages 468472 (15 November 2012) | Download Citation

Abstract

Calcium ions (Ca2+) have an important role as secondary messengers in numerous signal transduction processes1,2,3,4, and cells invest much energy in controlling and maintaining a steep gradient between intracellular (0.1-micromolar) and extracellular (2-millimolar) Ca2+ concentrations1. Calmodulin-stimulated calcium pumps, which include the plasma-membrane Ca2+-ATPases (PMCAs), are key regulators of intracellular Ca2+ in eukaryotes5,6,7,8. They contain a unique amino- or carboxy-terminal regulatory domain responsible for autoinhibition, and binding of calcium-loaded calmodulin to this domain releases autoinhibition and activates the pump. However, the structural basis for the activation mechanism is unknown and a key remaining question is how calmodulin-mediated PMCA regulation can cover both basal Ca2+ levels in the nanomolar range as well as micromolar-range Ca2+ transients generated by cell stimulation7. Here we present an integrated study combining the determination of the high-resolution crystal structure of a PMCA regulatory-domain/calmodulin complex with in vivo characterization and biochemical, biophysical and bioinformatics data that provide mechanistic insights into a two-step PMCA activation mechanism mediated by calcium-loaded calmodulin. The structure shows the entire PMCA regulatory domain and reveals an unexpected 2:1 stoichiometry with two calcium-loaded calmodulin molecules binding to different sites on a long helix. A multifaceted characterization of the role of both sites leads to a general structural model for calmodulin-mediated regulation of PMCAs that allows stringent, highly responsive control of intracellular calcium in eukaryotes, making it possible to maintain a stable, basal level at a threshold Ca2+ concentration, where steep activation occurs.

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Accessions

Primary accessions

Protein Data Bank

Data deposits

Atomic coordinates and structure factors for the crystal structure of (Cam7)2–Aca8R have been deposited with the Protein Data Bank under accession code 4AQR.

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Acknowledgements

We thank members of the Nissen and Palmgren labs for discussions, and P. Gourdon for help with data collection. We thank the staff at beamlines ID23-2 at the European Radiation Synchrotron Facility, France; PX3 at the Swiss Light Source, Paul Scherrer Institute, Switzerland; and X33 at EMBL/DESY, Germany. We are grateful to K. Nagai for a plasmid expressing mammalian CaM. Support from the European Community-Research Infrastructure Action under the FP7 is acknowledged for access to EMBL/DESY. H.T. is a Junior Research Fellow at Trinity College, Cambridge, and was supported by an EMBO Long-Term Fellowship, a Marie-Curie Intra-European Fellowship and an HFSP Long-Term Fellowship. P.N. was supported by an ERC advanced grant (BIOMEMOS).

Author information

Author notes

    • Henning Tidow
    •  & Lisbeth R. Poulsen

    These authors contributed equally to this work.

    • Kim L. Hein

    Present address: Centre for Molecular Medicine Norway, Nordic EMBL Partnership, University of Oslo, PO Box 1125, Blindern, N-0318 Oslo, Norway.

Affiliations

  1. Centre for Membrane Pumps in Cells and Disease — PUMPKIN, Aarhus University, Gustav Wieds Vej 10c, DK-8000 Aarhus C, Denmark

    • Henning Tidow
    • , Lisbeth R. Poulsen
    • , Michael Knudsen
    • , Kim L. Hein
    • , Michael G. Palmgren
    •  & Poul Nissen
  2. Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, DK-8000 Aarhus C, Denmark

    • Henning Tidow
    • , Kim L. Hein
    •  & Poul Nissen
  3. Department of Plant Biology and Biotechnology, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark

    • Lisbeth R. Poulsen
    •  & Michael G. Palmgren
  4. MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, UK

    • Antonina Andreeva
  5. Bioinformatics Research Centre, Aarhus University, CF Møllers Allé 8, DK-8000 Aarhus C, Denmark

    • Michael Knudsen
  6. Department of Mathematical Sciences, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark

    • Carsten Wiuf

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Contributions

H.T. designed and initiated the project, designed the expression constructs and developed the co-expression strategy, initially assisted by K.L.H. Protein purification, crystallization, structure determination and refinement, and the overall analysis of the results, was performed by H.T. L.R.P. performed biochemical and genetic analyses of Aca8 and derived mutants, developed methods for measuring calcium concentrations in vitro, and analysed biochemical and yeast complementation assays, supervised by M.G.P. A.A. performed bioinformatics sequence analysis, homology modelling and docking experiments. M.K. performed mathematical modelling, supervised by C.W. P.N. designed and supervised the project, and analysed results. H.T., L.R.P., A.A., M.G.P. and P.N. wrote the paper, and all authors commented on the paper.

Competing interests

The authors declare no competing financial interests.

Corresponding authors

Correspondence to Michael G. Palmgren or Poul Nissen.

Supplementary information

PDF files

  1. 1.

    Supplementary Information

    This file contains Supplementary Figures 1-10, Supplementary Tables 1-2 and additional references.

Videos

  1. 1.

    Structural illustration of the proposed two-step, broad range Ca2+-mediated CaM-activation mechanism.

    A homology model of ACA8 in surface representation color-coded based on sequence conservation (magenta = conserved / cyan = non-conserved) is shown with its regulatory domain docked against a conserved cleft only accessible in E2 conformation. With increasing Ca2+-concentration, Ca2+-CaM first binds and displaces high-affinity CaMBS1 allowing the pump to function at a basal rate (slow functional cycle) before even higher Ca2+-concentration leads to displacement of CaMBS2 from the catalytic core allowing free movement of the catalytic core as required for full ion pumping activity. Colour code of all components as in Fig. 1A.

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DOI

https://doi.org/10.1038/nature11539

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