Table 2 Microarray validation of 454 SNPs

From: The complete genome of an individual by massively parallel DNA sequencing

Affymetrix genotype* Affymetrix SNP array 454 Sequence† Agreement (%)
Homo ref. 254,753 253,348 99.4
Homo var. 104,547 99,387 95.1
Hetero 135,413 102,702 75.8
  1. *Homo ref., homozygous for reference allele; homo var., homozygous for the variant allele; hetero, heterozygous.
  2. †The genotype based on the alleles observed in 454 reads at each position of an Affymetrix marker.