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An ARF-GEF acting at the Golgi and in selective endocytosis in polarized plant cells

Abstract

Circumstantial evidence suggests that intracellular membrane trafficking pathways diversified independently in the plant kingdom1,2,3,4,5,6,7,8,9,10, but documented examples are rare6,11,12. ARF-GEFs (guanine-nucleotide exchange factors for ADP-ribosylation factor GTPases) are essential for vesicular trafficking in all eukaryotic kingdoms, but of the eight ARF-GEF families, only the ancestral BIG and GBF types are found in plants1,2. Whereas fungal and animal GBF proteins perform conserved functions at the Golgi, the Arabidopsis thaliana GBF protein GNOM is thought to act in only the process of recycling from endosomes3,4,5. We now show that the related Arabidopsis GBF protein GNOM-LIKE1 (GNL1) has an ancestral function at the Golgi but is also required for selective internalization from the plasma membrane in the presence of brefeldin A (BFA). We identified gnl1 mutants that accumulated biosynthetic and recycling endoplasmic reticulum markers in enlarged internal compartments. Notably, in the absence of functional GNL1, Golgi stacks were rendered sensitive to the selective ARF-GEF inhibitor BFA, which caused them to fuse with the endoplasmic reticulum. Furthermore, in BFA-treated gnl1 roots, the internalization of a polar plasma-membrane marker, the auxin efflux carrier PIN2, was selectively inhibited. Thus, GNL1 is a BFA-resistant GBF protein that functions with a BFA-sensitive ARF-GEF both at the Golgi and in selective endocytosis, but not in recycling from endosomes. We propose that the evolution of endocytic trafficking in plants was accompanied by neofunctionalization within the GBF family, whereas in other kingdoms it occurred independently by elaboration of additional ARF-GEF families.

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Figure 1: Phenotypes of gnl1 plants.
Figure 2: Golgi stacks in gnl1 are hypersensitive to BFA.
Figure 3: GNL1 is required for PIN2 accumulation in BFA bodies.

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References

  1. Cox, R., Mason-Gamer, R. J., Jackson, C. L. & Segev, N. Phylogenetic analysis of Sec7-domain-containing Arf nucleotide exchangers. Mol. Biol. Cell 15, 1487–1505 (2004)

    Article  CAS  Google Scholar 

  2. Mouratou, B. et al. The domain architecture of large guanine nucleotide exchange factors for the small GTP-binding protein Arf. BMC Genomics 6, 20 (2005)

    Article  Google Scholar 

  3. Garcia-Mata, R., Szul, T., Alvarez, C. & Sztul, E. ADP-ribosylation factor/COPI-dependent events at the endoplasmic reticulum–Golgi interface are regulated by the guanine nucleotide exchange factor GBF1. Mol. Biol. Cell 14, 2250–2261 (2003)

    Article  CAS  Google Scholar 

  4. Niu, T. K., Pfeifer, A. C., Lippincott-Schwartz, J. & Jackson, C. L. Dynamics of GBF1, a Brefeldin A-sensitive Arf1 exchange factor at the Golgi. Mol. Biol. Cell 16, 1213–1222 (2005)

    Article  CAS  Google Scholar 

  5. Jackson, C. L. & Casanova, J. E. Turning on ARF: the Sec7 family of guanine-nucleotide-exchange factors. Trends Cell Biol. 10, 60–67 (2000)

    Article  CAS  Google Scholar 

  6. Jürgens, G. Membrane trafficking in plants. Annu. Rev. Cell Dev. Biol. 20, 481–504 (2004)

    Article  Google Scholar 

  7. Murphy, A. S., Bandyopadhyay, A., Holstein, S. E. & Peer, W. A. Endocytotic cycling of PM proteins. Annu. Rev. Plant Biol. 56, 221–251 (2005)

    Article  CAS  Google Scholar 

  8. Rutherford, S. & Moore, I. The Arabidopsis Rab GTPase family: another enigma variation. Curr. Opin. Plant Biol. 5, 518–528 (2002)

    Article  CAS  Google Scholar 

  9. Sanderfoot, A. A., Assaad, F. F. & Raikhel, N. V. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Plant Physiol. 124, 1558–1569 (2000)

    Article  CAS  Google Scholar 

  10. Vernoud, V., Horton, A. C., Yang, Z. & Nielsen, E. Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol. 131, 1191–1208 (2003)

    Article  CAS  Google Scholar 

  11. Lauber, M. H. et al. The Arabidopsis KNOLLE protein is a cytokinesis-specific syntaxin. J. Cell Biol. 139, 1485–1493 (1997)

    Article  CAS  Google Scholar 

  12. Geldner, N. et al. The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112, 219–230 (2003)

    Article  CAS  Google Scholar 

  13. Zheng, H., Kunst, L., Hawes, C. & Moore, I. A GFP-based assay reveals a role for RHD3 in transport between the endoplasmic reticulum and Golgi apparatus. Plant J. 37, 398–414 (2004)

    Article  CAS  Google Scholar 

  14. Samalova, M., Fricker, M. & Moore, I. Ratiometric fluorescence-imaging assays of plant membrane traffic using polyproteins. Traffic 7, 1701–1723 (2006)

    Article  CAS  Google Scholar 

  15. D'Souza-Schorey, C. & Chavrier, P. ARF proteins: roles in membrane traffic and beyond. Nature Rev. Mol. Cell Biol. 7, 347–358 (2006)

    Article  CAS  Google Scholar 

  16. Geldner, N. The plant endosomal system—its structure and role in signal transduction and plant development. Planta 219, 547–560 (2004)

    Article  CAS  Google Scholar 

  17. Dettmer, J., Hong-Hermesdorf, A., Stierhof, Y. D. & Schumacher, K. Vacuolar H+-ATPase activity is required for endocytic and secretory trafficking in Arabidopsis. Plant Cell 18, 715–730 (2006)

    Article  CAS  Google Scholar 

  18. Zheng, H. et al. A Rab-E GTPase mutant acts downstream of the Rab-D subclass in biosynthetic membrane traffic to the plasma membrane in tobacco leaf epidermis. Plant Cell 17, 2020–2036 (2005)

    Article  CAS  Google Scholar 

  19. Kotzer, A. M. et al. AtRabF2b (Ara7) acts on the vacuolar trafficking pathway in tobacco leaf epidermal cells. J. Cell Sci. 117, 6377–6389 (2004)

    Article  CAS  Google Scholar 

  20. Ritzenthaler, C. et al. Reevaluation of the effects of brefeldin A on plant cells using tobacco Bright Yellow 2 cells expressing Golgi-targeted green fluorescent protein and COPI antisera. Plant Cell 14, 237–261 (2002)

    Article  CAS  Google Scholar 

  21. Satiat-Jeunemaitre, B., Cole, L., Bourett, T., Howard, R. & Hawes, C. Brefeldin A effects in plant and fungal cells: something new about vesicle trafficking? J. Microsc. 181, 162–177 (1996)

    Article  CAS  Google Scholar 

  22. Saint-Jore, C. M. et al. Redistribution of membrane proteins between the Golgi apparatus and endoplasmic reticulum in plants is reversible and not dependent on cytoskeletal networks. Plant J. 29, 661–678 (2002)

    Article  CAS  Google Scholar 

  23. Hawes, C. Cell biology of the plant Golgi apparatus. New Phytol. 165, 29–44 (2005)

    Article  Google Scholar 

  24. Lippincott-Schwartz, J. et al. Microtubule-dependent retrograde transport of proteins into the ER in the presence of brefeldin A suggests an ER recycling pathway. Cell 60, 821–836 (1990)

    Article  CAS  Google Scholar 

  25. Grebe, M. et al. Arabidopsis sterol endocytosis involves actin-mediated trafficking via ARA6-positive early endosomes. Curr. Biol. 13, 1378–1387 (2003)

    Article  CAS  Google Scholar 

  26. Xu, J. & Scheres, B. Dissection of Arabidopsis ADP-RIBOSYLATION FACTOR 1 function in epidermal cell polarity. Plant Cell 17, 525–536 (2005)

    Article  CAS  Google Scholar 

  27. Li, G. & Xue, H. W. Arabidopsis PLDζ2 regulates vesicle trafficking and is required for auxin response. Plant Cell 19, 281–295 (2007)

    Article  CAS  Google Scholar 

  28. Abas, L. et al. Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biol. 8, 249–256 (2006)

    Article  CAS  Google Scholar 

  29. Jaillais, Y., Fobis-Loisy, I., Miege, C., Rollin, C. & Gaude, T. AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis. Nature 443, 106–109 (2006)

    Article  ADS  CAS  Google Scholar 

  30. Macia, E. et al. The GDP-bound form of Arf6 is located at the plasma membrane. J. Cell Sci. 117, 2389–2398 (2004)

    Article  CAS  Google Scholar 

  31. Renna, L. et al. Identification and characterization of AtCASP, a plant transmembrane Golgi matrix protein. Plant Mol. Biol. 58, 109–122 (2005)

    Article  CAS  Google Scholar 

  32. Cheung, A. Y. et al. Rab2 GTPase regulates vesicle trafficking between the endoplasmic reticulum and the Golgi bodies and is important for pollen tube growth. Plant Cell 14, 945–962 (2002)

    Article  CAS  Google Scholar 

  33. Lefebvre, B., Batoko, H., Duby, G. & Boutry, M. Targeting of a Nicotiana plumbaginifolia H+-ATPase to the plasma membrane is not by default and requires cytosolic structural determinants. Plant Cell 16, 1772–1789 (2004)

    Article  CAS  Google Scholar 

  34. Batoko, H., Zheng, H.-Q., Hawes, C. & Moore, I. A. Rab1 GTPase is required for transport between the endoplasmic reticulum and Golgi apparatus and for normal Golgi movement in plants. Plant Cell 12, 2201–2217 (2000)

    Article  CAS  Google Scholar 

  35. Peer, W. A. et al. Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. Plant Cell 16, 1898–1911 (2004)

    Article  CAS  Google Scholar 

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Acknowledgements

We are indebted to S. Richter, Y.-D. Stierhof and G. Jürgens for generously providing plasmids and seeds with YFP-tagged GNL1, seeds of gnl1-1, antibodies, for sharing data before publication, and for discussions; A. Murphy for PIN2 antisera, advice on immunolocalization, and discussions; H. Zheng, who generated mutagenized secGFP(S76) seed; J. Denecke for anti-calreticulin/BiP antibody; and M. Bennett, M. Fricker, J. Pérez-Gomez, M. Grebe and J. Langdale for comments and discussions. We thank J. Baker and C. O’Brien for photographs and technical assistance. This work was supported by a studentship from the Malaysian Palm Oil Board (O.T.) and a grant from the BBSRC (I.M.).

Author Contributions O.T. isolated and characterized gnl1-2 and gnl1-3. I.M. assisted with imaging, wrote the paper and participated in discussions.

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Correspondence to Ian Moore.

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Supplementary Figures with Legends

This file contains Supplementary Figures S1 to S12 with Legends. These Supplementary Figures provide further detailed genetic and cellular characterisation of gnl1. (PDF 4773 kb)

Supplementary Table

This file contains Supplementary Table with details of image parameters used for each micrograph in Figures 1-3. (XLS 31 kb)

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Teh, Ok., Moore, I. An ARF-GEF acting at the Golgi and in selective endocytosis in polarized plant cells. Nature 448, 493–496 (2007). https://doi.org/10.1038/nature06023

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