Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript

A Retraction to this article was published on 31 January 2008

Abstract

MicroRNAs (miRNAs) are a class of small RNA molecules that regulate the stability or the translational efficiency of target messenger RNAs (mRNAs)1,2. The latency-associated transcript (LAT) of herpes simplex virus-1 (HSV-1) is the only viral gene expressed during latent infection in neurons3. LAT inhibits apoptosis and maintains latency by promoting the survival of infected neurons4. No protein product has been attributed to the LAT gene and the mechanism by which LAT protects cells from apoptosis is not yet known. Here we show that a miRNA encoded by the HSV-1 LAT gene confers resistance to apoptosis. Neuroblastoma cells transfected with a fragment of the LAT gene show reduced susceptibility to cell death. The anti-apoptotic function of LAT has been mapped to a region within the first exon5,6. We have identified and characterized a microRNA (miR-LAT) generated from the exon 1 region of the HSV-1 LAT gene. The LAT miRNA was found to accumulate in cells transiently transfected with the LAT gene fragment or infected with a wild-type strain of HSV-1. A mutant virus in which a 372-nucleotide fragment encompassing the mature miRNA was deleted neither protected the infected cells from apoptosis nor generated an miRNA. miR-LAT exerts its anti-apoptotic effect by downregulation of transforming growth factor (TGF)-β 1 and SMAD3 expression, both of which are functionally linked in the TGF-β pathway. Our results suggest that the miRNA encoded by the HSV-1 LAT gene regulates the induction of apoptosis in infected cells by modulation of TGF-β signalling and thus contributes to the persistence of HSV in a latent form in sensory neurons.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: LAT inhibits apoptosis by a Dicer-dependent mechanism.
Figure 2: The LAT gene of HSV-1 codes for a miRNA.
Figure 3: The LAT region of HSV-1 17 + protects cells from apoptosis.
Figure 4: Modulation of TGF-β signalling by miR-LAT.

Similar content being viewed by others

References

  1. Ambros, V. MicroRNAs: tiny regulators with great potential. Cell 107, 823–826 (2001)

    Article  CAS  PubMed  Google Scholar 

  2. Bartel, D. P. MicroRNAs: genomics, biogenesis, mechanism and function. Cell 116, 281–297 (2004)

    Article  CAS  PubMed  Google Scholar 

  3. Jones, C. Herpes simplex virus type 1 and bovine herpesvirus 1 latency. Clin. Microbiol. Rev. 16, 79–95 (2003)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Perng, G. C. et al. Virus-induced neuronal apoptosis blocked by the herpes simplex virus latency-associated transcript. Science 287, 1500–1503 (2000)

    Article  ADS  CAS  PubMed  Google Scholar 

  5. Ahmed, M., Lock, M., Miller, C. G. & Fraser, N. W. Regions of the herpes simplex virus type 1 latency-associated transcript that protect cells from apoptosis in vitro and protect neuronal cells in vivo. J. Virol. 76, 717–729 (2002)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Inman, M. et al. Region of herpes simplex virus type 1 latency-associated transcript sufficient for wild-type spontaneous reactivation promotes cell survival in tissue culture. J. Virol. 75, 3636–3646 (2001)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Bennasser, Y., Le, S. Y., Benkirane, M. & Jeang, K. T. Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 22, 607–619 (2005)

    Article  CAS  PubMed  Google Scholar 

  8. Laferriere, A., Gautheret, D. & Cedergren, R. An RNA pattern matching program with enhanced performance and portability. Comput. Appl. Biosci. 10, 211–212 (1994)

    CAS  PubMed  Google Scholar 

  9. Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406–3415 (2003)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Tomari, Y. & Zamore, P. D. Perspective: machines for RNAi. Genes Dev. 19, 517–529 (2005)

    Article  CAS  PubMed  Google Scholar 

  11. John, B. et al. Human MicroRNA targets. PLoS Biol. 2, e363 (2004)

    Article  PubMed  PubMed Central  Google Scholar 

  12. Derynck, R., Akhurst, R. J. & Balmain, A. TGF-β signaling in tumor suppression and cancer progression. Nature Genet. 29, 117–129 (2001)

    Article  CAS  PubMed  Google Scholar 

  13. Feng, X. H. & Derynck, R. Specificity and versatility in TGF-β signaling through Smads. Annu. Rev. Cell Dev. Biol. 21, 659–693 (2005)

    Article  CAS  PubMed  Google Scholar 

  14. Schuster, N. & Krieglstein, K. Mechanisms of TGF-β-mediated apoptosis. Cell Tissue Res. 307, 1–14 (2002)

    Article  CAS  PubMed  Google Scholar 

  15. Zawel, L. et al. Human Smad3 and Smad4 are sequence-specific transcription activators. Mol. Cell 1, 611–617 (1998)

    Article  CAS  PubMed  Google Scholar 

  16. Jin, L. et al. Identification of herpes simplex virus type 1 latency-associated transcript sequences that both inhibit apoptosis and enhance the spontaneous reactivation phenotype. J. Virol. 77, 6556–6561 (2003)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Jin, L. et al. A herpes simplex virus type 1 mutant expressing a baculovirus inhibitor of apoptosis gene in place of latency-associated transcript has a wild-type reactivation phenotype in the mouse. J. Virol. 79, 12286–12295 (2005)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Sullivan, C. S. & Ganem, D. MicroRNAs and viral infection. Mol. Cell 20, 3–7 (2005)

    Article  CAS  PubMed  Google Scholar 

  19. Schutz, S. & Sarnow, P. Interaction of viruses with the mammalian RNA interference pathway. Virology 344, 151–157 (2006)

    Article  PubMed  Google Scholar 

  20. Chendrimada, T. P. et al. TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature 436, 740–744 (2005)

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  21. Lau, N. C., Lim, L. P., Weinstein, E. G. & Bartel, D. P. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294, 797–799 (2001)

    Article  Google Scholar 

  22. Pfeffer, S., Lagos-Quintana, M. & Tuschl, T. in Current Protocols in Molecular Biology (eds Ausbel, F. M. et al.) 26.4.1–26.4.18 (Wiley Interscience, New York, 2003)

    Google Scholar 

Download references

Acknowledgements

We thank K.-T. Jeang for the GFP-shRNA construct; Z. Mourelatos for the PRL-TK vector; and R. Sheikhattar for the Dicer polyclonal antibody. We thank B. Brunk for help with the computational analysis. We also thank T. Chendrimada for advice and help with miRNA protocols. We acknowledge S. Berges for critical review of the manuscript. This work was supported by a National Institute of Health grant. A.G.H. is supported by an NSF Career Award Grant. Author Contributions A.G. conceived the project and carried out all experiments described. J.J.G. provided technical assistance. P.S. and A.G.H. developed and applied computational algorithm for miRNA detection and target prediction. N.W.F. directed and supervised the experimental work and interpretation of data. The manuscript was prepared by A.G. and N.W.F.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to N. W. Fraser.

Ethics declarations

Competing interests

Reprints and permissions information is available at npg.nature.com/reprintsandpermissions. The authors declare no competing financial interests.

Supplementary information

Supplementary Figures

This file contains Supplementary Figures 1–7. This file contains errors in Supplementary Figures 3–5. Please refer to below Corrigendum. (PDF 3101 kb)

Supplementary Methods

This file contains additional detailed description of protocols used in this study. (PDF 78 kb)

Supplementary Figure 3

This file contains the correct Supplementary Figure 3. Please refer to the below Corrigendum for details. (PDF 1070 kb)

Supplementary Figure 4

This file contains the correct Supplementary Figure 4. Please refer to the below Corrigendum for details. (PDF 1048 kb)

Supplementary Figure 5

This file contains the correct Supplementary Figure 5. Please refer to the below Corrigendum for details. (PDF 982 kb)

Corrigendum

This file contains details of an error in the original publication of this Supplementary Information. (DOC 23 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Gupta, A., Gartner, J., Sethupathy, P. et al. Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript. Nature 442, 82–85 (2006). https://doi.org/10.1038/nature04836

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nature04836

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing