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Oncogenic activity of Cdc6 through repression of the INK4/ARF locus

A Retraction to this article was published on 13 July 2017

Abstract

The INK4/ARF locus encodes three tumour suppressors (p15INK4b, ARF and p16INK4a) and is among the most frequently inactivated loci in human cancer1,2. However, little is known about the mechanisms that govern the expression of this locus. Here we have identified a putative DNA replication origin at the INK4/ARF locus that assembles a multiprotein complex containing Cdc6, Orc2 and MCMs, and that coincides with a conserved noncoding DNA element (regulatory domain RDINK4/ARF). Targeted and localized RNA-interference-induced heterochromatinization of RDINK4/ARF results in transcriptional repression of the locus, revealing that RDINK4/ARF is a relevant transcriptional regulatory element. Cdc6 is overexpressed in human cancers, where it might have roles in addition to DNA replication3,4,5. We have found that high levels of Cdc6 result in RDINK4/ARF-dependent transcriptional repression, recruitment of histone deacetylases and heterochromatinization of the INK4/ARF locus, and a concomitant decrease in the expression of the three tumour suppressors encoded by this locus. This mechanism is reminiscent of the silencing of the mating-type HM loci in yeast by replication factors6. Consistent with its ability to repress the INK4/ARF locus, Cdc6 has cellular immortalization activity and neoplastic transformation capacity in cooperation with oncogenic Ras. Furthermore, human lung carcinomas with high levels of Cdc6 are associated with low levels of p16INK4a. We conclude that aberrant expression of Cdc6 is oncogenic by directly repressing the INK4/ARF locus through the RDINK4/ARF element.

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Figure 1: Identification of a regulatory domain, RDINK4/ARF, in the INK4/ARF locus.
Figure 2: Binding of Cdc6 to RDINK4/ARF and repression of the INK4/ARF locus.
Figure 3: Oncogenic activity of Cdc6.
Figure 4: Reciprocal relationship between Cdc6 and p16INK4a protein levels in primary NSCLCs.

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References

  1. Lowe, S. W. & Sherr, C. J. Tumor suppression by Ink4a-Arf: progress and puzzles. Curr. Opin. Genet. Dev. 13, 77–83 (2003)

    Article  CAS  Google Scholar 

  2. Sherr, C. J. The INK4a/ARF network in tumour suppression. Nature Rev. Mol. Cell Biol. 2, 731–737 (2001)

    Article  ADS  CAS  Google Scholar 

  3. Karakaidos, P. et al. Overexpression of the replication licensing regulators hCdt1 and hCdc6 characterizes a subset of non-small-cell lung carcinomas: synergistic effect with mutant p53 on tumour growth and chromosomal instability—evidence of E2F-1 transcriptional control over hCdt1. Am. J. Pathol. 165, 1351–1365 (2004)

    Article  CAS  Google Scholar 

  4. Semple, J. W. & Duncker, B. P. ORC-associated replication factors as biomarkers for cancer. Biotechnol. Adv. 22, 621–631 (2004)

    Article  CAS  Google Scholar 

  5. Murphy, N. et al. p16INK4A, CDC6, and MCM5: predictive biomarkers in cervical preinvasive neoplasia and cervical cancer. J. Clin. Pathol. 58, 525–534 (2005)

    Article  CAS  Google Scholar 

  6. Fox, C. A. & McConnell, K. H. Toward biochemical understanding of a transcriptionally silenced chromosomal domain in Saccharomyces cerevisiae. J. Biol. Chem. 280, 8629–8632 (2005)

    Article  CAS  Google Scholar 

  7. Pennacchio, L. A. & Rubin, E. M. Genomic strategies to identify mammalian regulatory sequences. Nature Rev. Genet. 2, 100–109 (2001)

    Article  CAS  Google Scholar 

  8. Cvetic, C. & Walter, J. C. Eukaryotic origins of DNA replication: could you please be more specific? Semin. Cell Dev. Biol. 16, 343–353 (2005)

    Article  CAS  Google Scholar 

  9. Antequera, F. Genomic specification and epigenetic regulation of eukaryotic DNA replication origins. EMBO J. 23, 4365–4370 (2004)

    Article  CAS  Google Scholar 

  10. Kawasaki, H. & Taira, K. Induction of DNA methylation and gene silencing by short interfering RNAs in human cells. Nature 431, 211–217 (2004)

    Article  ADS  CAS  Google Scholar 

  11. Morris, K. V., Chan, S. W., Jacobsen, S. E. & Looney, D. J. Small interfering RNA-induced transcriptional gene silencing in human cells. Science 305, 1289–1292 (2004)

    Article  ADS  CAS  Google Scholar 

  12. Serrano, M., Lin, A. W., McCurrach, M. E., Beach, D. & Lowe, S. W. Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a. Cell 88, 593–602 (1997)

    Article  CAS  Google Scholar 

  13. Stucki, M., Stagljar, I., Jonsson, Z. O. & Hubscher, U. A coordinated interplay: proteins with multiple functions in DNA replication, DNA repair, cell cycle/checkpoint control, and transcription. Prog. Nucleic Acid Res. Mol. Biol. 65, 261–298 (2001)

    Article  CAS  Google Scholar 

  14. Abdurashidova, G. et al. Localization of proteins bound to a replication origin of human DNA along the cell cycle. EMBO J. 22, 4294–4303 (2003)

    Article  CAS  Google Scholar 

  15. Gonzalez, M. A., Tachibana, K. E., Laskey, R. A. & Coleman, N. Control of DNA replication and its potential clinical exploitation. Nature Rev. Cancer 5, 135–141 (2005)

    Article  CAS  Google Scholar 

  16. Frolova, N. S., Schek, N., Tikhmyanova, N. & Coleman, T. R. Xenopus Cdc6 performs separate functions in initiating DNA replication. Mol. Biol. Cell 13, 1298–1312 (2002)

    Article  CAS  Google Scholar 

  17. Tao, L., Dong, Z., Leffak, M., Zannis-Hadjopoulos, M. & Price, G. Major DNA replication initiation sites in the c-myc locus in human cells. J. Cell. Biochem. 78, 442–457 (2000)

    Article  CAS  Google Scholar 

  18. Araujo, F. D. et al. Identification of initiation sites for DNA replication in the human dnmt1 (DNA-methyltransferase) locus. J. Biol. Chem. 274, 9335–9341 (1999)

    Article  CAS  Google Scholar 

  19. Ladenburger, E. M., Keller, C. & Knippers, R. Identification of a binding region for human origin recognition complex proteins 1 and 2 that coincides with an origin of DNA replication. Mol. Cell. Biol. 22, 1036–1048 (2002)

    Article  CAS  Google Scholar 

  20. Mutskov, V. & Felsenfeld, G. Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9. EMBO J. 23, 138–149 (2004)

    Article  CAS  Google Scholar 

  21. Katan-Khaykovich, Y. & Struhl, K. Heterochromatin formation involves changes in histone modifications over multiple cell generations. EMBO J. 24, 2138–2149 (2005)

    Article  CAS  Google Scholar 

  22. Wistuba, I. I., Gazdar, A. F. & Minna, J. D. Molecular genetics of small cell lung carcinoma. Semin. Oncol. 28, 3–13 (2001)

    Article  CAS  Google Scholar 

  23. Delgado, S., Gomez, M., Bird, A. & Antequera, F. Initiation of DNA replication at CpG islands in mammalian chromosomes. EMBO J. 17, 2426–2435 (1998)

    Article  CAS  Google Scholar 

  24. Gonzalez, S., Prives, C. & Cordon-Cardo, C. p73α regulation by Chk1 in response to DNA damage. Mol. Cell. Biol. 23, 8161–8171 (2003)

    Article  CAS  Google Scholar 

  25. Mendez, J. & Stillman, B. Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis. Mol. Cell. Biol. 20, 8602–8612 (2000)

    Article  CAS  Google Scholar 

  26. Ekholm-Reed, S. et al. Deregulation of cyclin E in human cells interferes with prereplication complex assembly. J. Cell Biol. 165, 789–800 (2004)

    Article  CAS  Google Scholar 

  27. Arcellana-Panlilio, M. Y. et al. Decreased expression of the INK4 family of cyclin-dependent kinase inhibitors in Wilms tumor. Genes Chromosom. Cancer 29, 63–69 (2000)

    Article  CAS  Google Scholar 

  28. Wei, W., Hemmer, R. M. & Sedivy, J. M. Role of p14ARF in replicative and induced senescence of human fibroblasts. Mol. Cell. Biol. 21, 6748–6757 (2001)

    Article  CAS  Google Scholar 

Download references

Acknowledgements

S.G. was supported by the Human Frontiers Science Program Organization and by the FIS from the Spanish Ministry of Health. Research was supported by the CNIO and by grants from the Spanish Ministry of Education and Science (to M.S., F.A. and J.M.), the European Union project INTACT (to M.S.) and Fundacion Caja Madrid (to J.M.).

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Correspondence to Manuel Serrano.

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Gonzalez, S., Klatt, P., Delgado, S. et al. Oncogenic activity of Cdc6 through repression of the INK4/ARF locus. Nature 440, 702–706 (2006). https://doi.org/10.1038/nature04585

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