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Pathogenic fungus harbours endosymbiotic bacteria for toxin production

Abstract

A number of plant pathogenic fungi belonging to the genus Rhizopus are infamous for causing rice seedling blight. This plant disease is typically initiated by an abnormal swelling of the seedling roots without any sign of infection by the pathogen1,2,3,4. This characteristic symptom is in fact caused by the macrocyclic polyketide metabolite rhizoxin that has been isolated from cultures of Rhizopus sp.5,6. The phytotoxin exerts its destructive effect by binding to rice β-tubulin, which results in inhibition of mitosis and cell cycle arrest7,8. Owing to its remarkably strong antimitotic activity in most eukaryotic cells, including various human cancer cell lines, rhizoxin has attracted considerable interest as a potential antitumour drug9,10. Here we show that rhizoxin is not biosynthesized by the fungus itself, but by endosymbiotic, that is, intracellular living, bacteria of the genus Burkholderia. Our unexpected findings unveil a remarkably complex symbiotic-pathogenic relationship that extends the fungus–plant interaction to a third, bacterial, key-player, and opens new perspectives for pest control.

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Figure 1
Figure 2: Results of PCR experiments and phylogenetic affiliation of the symbionts.
Figure 3: Laser microscopic investigation of fungal mycelium.
Figure 4: HPLC profiles of culture extracts monitored at 310 nm for the detection of rhizoxin.

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References

  1. Furuya, S., Kurata, M. & Saito, T. Studies on Rhizopus sp. causing growth injury of young rice seedlings and its chemical control. Proc. Assoc. Plant Protect. Shikoku 9, 49–55 (1974)

    Google Scholar 

  2. Ibaragi, T. Studies on rice seedling blight. I. Growth injury caused by Rhizopus sp. under high temperature. Ann. Phytopathol. Soc. Jpn 39, 141–144 (1973)

    Google Scholar 

  3. Gho, N., Sato, Z., Yaoita, T. & Aoyagi, K. Studies on the control of Rhizopus in the nursery cases of rice seedlings. 5. Influence of a phytotoxic substance produced by Rhizopus on growth of rice. Proc. Assoc. Plant Protect. Shikoku 26, 90–94 (1978)

    Google Scholar 

  4. Noda, T., Hashiba, T. & Sato, Z. The structural changes in young swollen roots of rice seedlings infected with Rhizopus chinensis Saito. Ann. Phytopathol. Soc. Jpn 46, 40–45 (1980)

    Article  Google Scholar 

  5. Iwasaki, S. et al. Studies on macrocyclic lactone antibiotics. VII. Structure of a phytotoxin “rhizoxin” produced by Rhizopus chinensis. J. Antibiot. 37, 354–362 (1984)

    Article  CAS  PubMed  Google Scholar 

  6. Iwasaki, S. et al. Studies on macrocyclic lactone antibiotics. VIII. Absolute structures of rhizoxin and a related compound. J. Antibiot. 39, 424–429 (1986)

    Article  CAS  PubMed  Google Scholar 

  7. Koga-Ban, Y., Niki, T., Nagamura, Y., Sasaki, T. & Minobe, Y. cDNA sequences of three kinds of beta-tubulins from rice. DNA Res. 2, 21–26 (1995)

    Article  CAS  PubMed  Google Scholar 

  8. Takahashi, M. et al. Studies on macrocyclic lactone antibiotics. XI. Anti-mitotic and anti-tubulin activity of new antitumor antibiotics, rhizoxin and its homologues. J. Antibiot. 40, 66–72 (1987)

    Article  CAS  PubMed  Google Scholar 

  9. Tsuruo, T. et al. Rhizoxin, a macrocyclic lactone antibiotic, as a new antitumor agent against human and murine tumour cells and their vincristine-resistant sublines. Cancer Res. 46, 381–385 (1986)

    CAS  PubMed  Google Scholar 

  10. Jordan, A., Hadfield, J. A., Lawrence, N. J. & McGown, A. T. Tubulin as a target for anticancer drugs: agents which interact with the mitotic spindle. Med. Res. Rev. 18, 259–296 (1998)

    Article  CAS  PubMed  Google Scholar 

  11. Jennessen, J. et al. Secondary metabolite and mycotoxin production by the Rhizopus microsporus group. J. Agric. Food Chem. 53, 1833–1840 (2005)

    Article  CAS  PubMed  Google Scholar 

  12. Kobayashi, H., Iwasaki, S., Yamada, E. & Okuda, S. Biosynthesis of the antimitotic antitumour antibiotic rhizoxin by Rhizopus chinensis; Origins of the carbon atoms. J. Chem. Soc., Chem. Commun. 1702–1703 (1986)

  13. Hopwood, D. A. Genetic contributions to understanding polyketide synthases. Chem. Rev. 97, 2465–2497 (1997)

    Article  CAS  PubMed  Google Scholar 

  14. Nicholson, T. P. et al. Design and utility of oligonucleotide gene probes for fungal polyketide synthases. Chem. Biol. 8, 157–178 (2001)

    Article  CAS  PubMed  Google Scholar 

  15. Piel, J., Hui, D., Fusetani, N. & Matsunaga, S. Targeting modular polyketide synthases with iteratively acting acyltransferases from metagenomes of uncultured bacterial consortia. Environ. Microbiol. 6, 921–927 (2004)

    Article  CAS  PubMed  Google Scholar 

  16. Roberge, M. et al. Cell-based screen for antimitotic agents and identification of analogues of rhizoxin, eleutherobin, and paclitaxel in natural extracts. Cancer Res. 60, 5052–5058 (2000)

    CAS  PubMed  Google Scholar 

  17. Kenny, D. J., Russell, P., Rogers, D., Eley, S. M. & Titball, R. W. In vitro susceptibilities of Burkholderia mallei in comparison to those of other pathogenic Burkholderia spp. Antimicrob. Agents Chemother. 43, 2773–2775 (1999)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Hildebrand, M. et al. Approaches to identify, clone, and express symbiont bioactive metabolite genes. Nat. Prod. Rep. 21, 122–124 (2004)

    Article  CAS  PubMed  Google Scholar 

  19. Piel, J. Metabolites from symbiotic bacteria. Nat. Prod. Rep. 21, 519–538 (2004)

    Article  CAS  PubMed  Google Scholar 

  20. Piel, J. A polyketide synthase-peptide synthetase gene cluster from an uncultured bacterial symbiont of Paederus beetles. Proc. Natl Acad. Sci. USA 99, 14002–14007 (2002)

    Article  ADS  CAS  PubMed  Google Scholar 

  21. Piel, J. et al. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. Proc. Natl Acad. Sci. USA 101, 16222–16227 (2004)

    Article  ADS  CAS  PubMed  Google Scholar 

  22. Coenye, T. & Vandamme, P. Diversity and significance of Burkholderia species occupying diverse ecological niches. Environ. Microbiol. 5, 719–729 (2003)

    Article  CAS  PubMed  Google Scholar 

  23. Bianciotto, V. et al. An obligately endosymbiontic mycorrhizal fungus itself harbors obligately intracellular bacteria. Appl. Environ. Microbiol. 62, 3005–3010 (1996)

    CAS  PubMed  PubMed Central  Google Scholar 

  24. Bonfante, P. Plants, mycorrhizal fungi and endobacteria: a dialog among cells and genomes. Biol. Bull. 204, 215–220 (2003)

    Article  CAS  PubMed  Google Scholar 

  25. Kobayashi, M. et al. Cutaneous zygomycosis: a case report and review of Japanese reports. Mycoses 44, 311–315 (2001)

    Article  CAS  PubMed  Google Scholar 

  26. Ribes, J. A., Vanover-Sams, C. L. & Baker, D. J. Zygomycetes in human disease. Clin. Microbiol. Rev. 13, 236–301 (2000)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. He, J. & Hertweck, C. Iteration as programmed event during polyketide formation; molecular analysis of the aureothin biosynthesis gene cluster. Chem. Biol. 10, 1225–1232 (2003)

    Article  CAS  PubMed  Google Scholar 

  28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. The ClustalX windows interface: flexible strategies for multiple alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876–4882 (1997)

    Article  Google Scholar 

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Acknowledgements

We thank A. Perner for MS and HPLC-MS measurements, G.-M. Schwinger for strain cultivation, I. Löschmann for sequencing and A. Hartmann for practical help using the laser microscope. We are grateful to J. Piel for advice and discussions, and H. G. Floss and A. Brakhage for critically reading earlier versions of the manuscript. Financial support by the Leibniz Gemeinschaft is acknowledged.

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Correspondence to Christian Hertweck.

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The 16S rDNA nucleotide sequences of Rhizopus sp. symbionts have been deposited at the EMBL Nucleotide Sequence Database under the accession numbers AJ938141–AJ938144. Reprints and permissions information is available at npg.nature.com/reprintsandpermissionsu. The authors declare no competing financial interests.

Supplementary information

Supplementary Figure 1

MSn spectrum of rhizoxin (1,) produced by cultivated symbiont. Inset shows diagnostic fork — shape UV spectrum of the triene moiety of 1. (PDF 10489 kb)

Supplementary Figure 2

Generation of symbiont-free Rhizopus strain and reinfection with cultivated symbiont. Agarose (2 %) gel electrophoresis of 16S rDNA PCR products amplified with universal primers. As template served fungal metagenomic DNA of symbiont-free R. microsporus ATCC 62417 (lane 1), and R. microsporus ATCC 62417 after reinfection (lane 2). Lanes 3 and 4 are positive and negative controls, respectively. (PDF 128 kb)

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Partida-Martinez, L., Hertweck, C. Pathogenic fungus harbours endosymbiotic bacteria for toxin production. Nature 437, 884–888 (2005). https://doi.org/10.1038/nature03997

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