Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

Inheritance of a pre-inactivated paternal X chromosome in early mouse embryos

Abstract

In mammals, dosage compensation ensures equal X-chromosome expression between males (XY) and females (XX) by transcriptionally silencing one X chromosome in XX embryos1. In the prevailing view, the XX zygote inherits two active X chromosomes, one each from the mother and father, and X inactivation does not occur until after implantation2,3,4,5,6. Here, we report evidence to the contrary in mice. We find that one X chromosome is already silent at zygotic gene activation (2-cell stage). This X chromosome is paternal in origin and exhibits a gradient of silencing. Genes close to the X-inactivation centre show the greatest degree of inactivation, whereas more distal genes show variable inactivation and can partially escape silencing. After implantation, imprinted silencing in extraembryonic tissues becomes globalized and more complete on a gene-by-gene basis. These results argue that the XX embryo is in fact dosage compensated at conception along much of the X chromosome. We propose that imprinted X inactivation results from inheritance of a pre-inactivated X chromosome from the paternal germ line.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Paucity of transcription on one X chromosome in pre-implantation embryos.
Figure 2: Partial XP inactivation in pre-implantation embryos.
Figure 3: Autosomal expression in pre-implantation embryos and pattern of X-linked expression in post-implantation cells.
Figure 4: Limited spread of Xist RNA and a unified model of XCI in the mouse.

Similar content being viewed by others

References

  1. Lyon, M. F. Gene action in the X-chromosome of the mouse (Mus musculus L.). Nature 190, 372–373 (1961)

    Article  ADS  CAS  Google Scholar 

  2. Mukherjee, A. B. Cell cycle analysis and X-chromosome inactivation in the developing mouse. Proc. Natl Acad. Sci. USA 73, 1608–1611 (1976)

    Article  ADS  CAS  Google Scholar 

  3. Epstein, C., Smith, S., Travis, B. & Tucker, G. Both X-chromosomes function before visible X-chromosome inactivation in female mouse embryos. Nature 274, 500–503 (1978)

    Article  ADS  CAS  Google Scholar 

  4. Kratzer, P. G. & Gartler, S. M. HGPRT activity changes in preimplantation mouse embryos. Nature 274, 503–504 (1978)

    Article  ADS  CAS  Google Scholar 

  5. Adler, D. A., West, J. D. & Chapman, V. M. Expression of alpha-galactosidase in preimplantation mouse embryos. Nature 267, 838–839 (1977)

    Article  ADS  CAS  Google Scholar 

  6. Lyon, M. F. in Results and Problems in Cell Differentiation (ed. Ohlsson, R.) 73–90 (Springer, Heidelberg, 1999)

    Google Scholar 

  7. Takagi, N. & Sasaki, M. Preferential inactivation of the paternally derived X-chromosome in the extraembryonic membranes of the mouse. Nature 256, 640–642 (1975)

    Article  ADS  CAS  Google Scholar 

  8. Marahrens, Y., Panning, B., Dausman, J., Strauss, W. & Jaenisch, R. Xist-deficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev. 11, 156–166 (1997)

    Article  CAS  Google Scholar 

  9. Kay, G. F. et al. Expression of Xist during mouse development suggests a role in the initiation of X chromosome inactivation. Cell 72, 171–182 (1993)

    Article  CAS  Google Scholar 

  10. Matsui, J., Goto, Y. & Takagi, N. Control of Xist expression for imprinted and random X chromosome inactivation in mice. Hum. Mol. Genet. 10, 1393–1401 (2001)

    Article  CAS  Google Scholar 

  11. Huynh, K. D. & Lee, J. T. Imprinted X inactivation in eutherians: a model of gametic execution and zygotic relaxation. Curr. Opin. Cell Biol. 13, 690–697 (2001)

    Article  CAS  Google Scholar 

  12. Krietsch, W. K. et al. The expression of X-linked phosphoglycerate kinase in the early mouse embryo. Differentiation 23, 141–144 (1982)

    Article  CAS  Google Scholar 

  13. Latham, K. E., Patel, B., Bautista, F. D. M. & Hawes, S. M. Effects of X chromosome number and parental origin on X-linked gene expression in preimplantation mouse embryos. Biol. Reprod. 63, 64–73 (2000)

    Article  CAS  Google Scholar 

  14. Mayer, W., Niveleau, A., Walter, J., Fundele, R. & Haaf, T. Demethylation of the zygotic paternal genome. Nature 3, 501–502 (2000)

    Article  ADS  Google Scholar 

  15. Hall, L. L. et al. An ectopic human XIST gene can induce chromosome inactivation in postdifferentiation human HT-1080 cells. Proc. Natl Acad. Sci. USA 99, 8677–8682 (2002)

    Article  ADS  CAS  Google Scholar 

  16. Schultz, R. M. Regulation of zygotic gene activation in the mouse. Bioessays 15, 531–538 (1993)

    Article  CAS  Google Scholar 

  17. Hartshorn, C., Rice, J. E. & Wangh, L. J. Differential pattern of Xist RNA accumulation in single blastomeres isolated from 8-cell stage mouse embryos following laser zona drilling. Mol. Reprod. Dev. 64, 41–51 (2003)

    Article  CAS  Google Scholar 

  18. Mak, W. et al. Mitotically stable association of polycomb group proteins Eed and Enx1 with the inactive X chromosome in trophoblast stem cells. Curr. Biol. 12, 1016–1020 (2002)

    Article  CAS  Google Scholar 

  19. Nothias, J. Y., Majumder, S., Kaneko, K. J. & DePamphilis, M. L. Regulation of gene expression at the beginning of mammalian development. J. Biol. Chem. 270, 22077–22080 (1995)

    Article  CAS  Google Scholar 

  20. Heard, E., Clerc, P. & Avner, P. X-chromosome inactivation in mammals. Annu. Rev. Genet. 31, 571–610 (1997)

    Article  CAS  Google Scholar 

  21. Wutz, A. & Jaenisch, R. A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation. Mol. Cell 5, 695–705 (2000)

    Article  CAS  Google Scholar 

  22. Chadwick, B. P. & Willard, H. F. SETting the stage: Eed-Enx1 leaves and epigenetic signature on the inactive X chromosome. Dev. Cell 4, 445–447 (2003)

    Article  CAS  Google Scholar 

  23. Duthie, S. M. et al. Xist RNA exhibits a banded localization on the inactive X chromosome and is excluded from autosomal material in cis. Hum. Mol. Genet. 8, 195–204 (1999)

    Article  CAS  Google Scholar 

  24. Lifschytz, E. & Lindsley, D. L. The role of X-chromosome inactivation during spermatogenesis. Proc. Natl Acad. Sci. USA 69, 182–186 (1972)

    Article  ADS  CAS  Google Scholar 

  25. Graves, J. A. M. Mammals that break the rules: Genetics of marsupials and monotremes. Annu. Rev. Genet. 30, 233–260 (1996)

    Article  CAS  Google Scholar 

  26. Lee, J. T. Molecular links between X-inactivation and autosomal imprinting: X-inactivation as a driving force for the evolution of imprinting. Curr. Biol. 13, R242–R254 (2003)

    Article  CAS  Google Scholar 

  27. Jegalian, K. & Page, D. C. A proposed path by which genes common to mammalian X and Y chromosomes evolve to become X inactivated. Nature 394, 776–780 (1998)

    Article  ADS  CAS  Google Scholar 

  28. Tanaka, S., Kunath, T., Hadjantonakis, A. K., Nagy, A. & Rossant, J. Promotion of trophoblast stem cell proliferation by FGF4. Science 282, 2072–2075 (1998)

    Article  ADS  CAS  Google Scholar 

  29. Stavropoulos, N., Lu, N. & Lee, J. T. A functional role for Tsix transcription in blocking Xist RNA accumulation but not in X-chromosome choice. Proc. Natl Acad. Sci. USA 98, 10232–10237 (2001)

    Article  ADS  CAS  Google Scholar 

  30. Carrel, L. et al. X inactivation analysis and DNA methylation studies of the ubiquitin activating enzyme E1 and PCTAIRE-1 genes in human and mouse. Hum. Mol. Genet. 5, 391–401 (1996)

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We are grateful to S. Shinwa for instruction in manipulating pre-implantation embryos, and to S. Shibata and Y. Ogawa for sharing reagents. We thank C. L. Tsai, L. F. Zhang and B. K. Sun for critical reading of the manuscript, and all members of the laboratory for discussion. This work was funded by the National Institutes of Health, USA, the Pew Scholar Program, and the Howard Hughes Medical Institute.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jeannie T. Lee.

Ethics declarations

Competing interests

The authors declare that they have no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Huynh, K., Lee, J. Inheritance of a pre-inactivated paternal X chromosome in early mouse embryos. Nature 426, 857–862 (2003). https://doi.org/10.1038/nature02222

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nature02222

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing