The transcription factor Eyes absent is a protein tyrosine phosphatase

Abstract

Post-translational modifications provide sensitive and flexible mechanisms to dynamically modulate protein function in response to specific signalling inputs1. In the case of transcription factors, changes in phosphorylation state can influence protein stability, conformation, subcellular localization, cofactor interactions, transactivation potential and transcriptional output1. Here we show that the evolutionarily conserved transcription factor Eyes absent (Eya)2,3 belongs to the phosphatase subgroup of the haloacid dehalogenase (HAD) superfamily4,5, and propose a function for it as a non-thiol-based protein tyrosine phosphatase. Experiments performed in cultured Drosophila cells and in vitro indicate that Eyes absent has intrinsic protein tyrosine phosphatase activity and can autocatalytically dephosphorylate itself. Confirming the biological significance of this function, mutations that disrupt the phosphatase active site severely compromise the ability of Eyes absent to promote eye specification and development in Drosophila. Given the functional importance of phosphorylation-dependent modulation of transcription factor activity, this evidence for a nuclear transcriptional coactivator with intrinsic phosphatase activity suggests an unanticipated method of fine-tuning transcriptional regulation.

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Figure 1: Eya is a member of the phosphatase subgroup of the HAD superfamily.
Figure 2: Eya exhibits phosphatase activity in vitro.
Figure 3: EyaHAD mutants have severely reduced activity relative to EyaWT in ectopic-eye-induction and genetic rescue assays.
Figure 4: EyaHAD mutations do not disrupt the role of Eya as a transcriptional coactivator in conjunction with So.
Figure 5: Eya has protein tyrosine phosphatase activity.

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Acknowledgements

We thank M. Voas, D. Doroquez, L. Doyon and B. Chaffee for technical assistance, J. Flynn, S. Neher and S. Flaugh for advice, reagents and technical help, D. Maas for murine Eya complementary DNAs, the Rebay lab for advice and discussions, F. Pignoni for the eya2 stocks used in the rescue assay, and R. Hegde for sharing unpublished information. We are grateful for advice, comments and encouragement from R. Fehon, G. Fink, T. Orr-Weaver, S. Shenolikar, F. Solomon and J. York. T.L.T., S.J.S., I.A.M. and B.E.W.P. are supported by the Ludwig Foundation, the Howard Hughes Medical Institute, the Packard Foundation and the National Science Foundation, respectively. I.R. is supported by the National Eye Institute and the Burroughs Wellcome Fund.

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Correspondence to Ilaria Rebay.

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Tootle, T., Silver, S., Davies, E. et al. The transcription factor Eyes absent is a protein tyrosine phosphatase. Nature 426, 299–302 (2003). https://doi.org/10.1038/nature02097

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