Table 1 Average coefficients of ancestry proportion of membership (Q) in partition K=5 generated using STRUCTURE, among Peruvian subpopulations in comparison with the predefined 52 reference populations of HGDP-CEPH

From: Tracing the genomic ancestry of Peruvians reveals a major legacy of pre-Columbian ancestors

  K=5 K=2
Location n America Oceania East Asia Europe_ ME_CA Africa Not America America
Andes
 Ayacucho 31 0.808 0.058 0.031 0.081 0.022 0.228 0.772
 Huancayo 29 0.822 0.040 0.049 0.061 0.028 0.213 0.787
 Cabanaconde 20 0.923 0.022 0.019 0.026 0.01 0.156 0.844
 Chivay 25 0.930 0.019 0.019 0.023 0.009 0.151 0.849
 Characato 8 0.548 0.136 0.041 0.244 0.031 0.346 0.654
 Mollebaya 8 0.852 0.026 0.080 0.031 0.011 0.179 0.821
 Ocopon 11 0.903 0.024 0.019 0.037 0.017 0.171 0.829
 Chogo 14 0.725 0.068 0.033 0.146 0.028 0.267 0.733
 Cajamarca 34 0.619 0.093 0.049 0.205 0.034 0.311 0.689
 San Marcos 19 0.538 0.093 0.037 0.312 0.02 0.336 0.664
 Andahuaylas 19 0.934 0.017 0.022 0.018 0.008 0.131 0.869
 Kaquiabamba 9 0.918 0.018 0.041 0.016 0.007 0.149 0.851
 Huarochirí 15 0.911 0.020 0.037 0.02 0.012 0.175 0.825
 Yanque 10 0.955 0.011 0.015 0.011 0.008 0.124 0.876
 Uros 25 0.936 0.020 0.014 0.018 0.012 0.145 0.855
 Anapia 24 0.958 0.009 0.017 0.009 0.007 0.112 0.888
 Amantani 31 0.961 0.009 0.013 0.01 0.006 0.107 0.893
 Taquile 23 0.965 0.009 0.011 0.009 0.006 0.105 0.895
Amazon
 Andoas 71 0.903 0.026 0.022 0.037 0.012 0.153 0.847
 Iquitos 8 0.882 0.022 0.060 0.018 0.018 0.196 0.804
 Pucallpa 10 0.764 0.090 0.052 0.080 0.014 0.242 0.758
 Chachapoyas 15 0.806 0.034 0.082 0.054 0.024 0.218 0.782
 Lamas 18 0.800 0.060 0.035 0.087 0.018 0.222 0.778
Coast
 Lambayeque 31 0.710 0.067 0.046 0.145 0.033 0.280 0.720
 Lima 43 0.690 0.099 0.044 0.143 0.023 0.283 0.717
Total 551 0.830 0.044 0.035 0.074 0.017 0.200 0.800
  1. Abbreviations: CA, Central Asia; ME, Middle East. The Q results for partition K=2 are also shown for comparisons between two clusters: not-America and America.