Asymmetry of parental origin in long QT syndrome: preferential maternal transmission of KCNQ1 variants linked to channel dysfunction

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Transmission distortion of disease-causing alleles in long QT syndrome (LQTS) has been reported, suggesting a potential role of KCNQ1 and KCNH2 in reproduction. This study sought to investigate parental transmission in LQTS families according to ethnicity, gene loci (LQT1-3: KCNQ1, KCNH2, and SCN5A) or severity of channel dysfunction. We studied 3782 genotyped members from 679 European and Japanese LQTS families (2748 carriers). We determined grandparental and parental origins of variant alleles in 1903 children and 624 grandchildren, and the grandparental origin of normal alleles in healthy children from 44 three-generation control families. LQTS alleles were more of maternal than paternal origin (61 vs 39%, P<0.001). The ratio of maternally transmitted alleles in LQT1 (66%) was higher than in LQT2 (56%, P<0.001) and LQT3 (57%, P=0.03). Unlike the Mendelian distribution of grandparental alleles seen in control families, variant grandparental LQT1 and LQT2 alleles in grandchildren showed an excess of maternally transmitted grandmother alleles. For LQT1, maternal transmission differs according to the variant level of dysfunction with 68% of maternal transmission for dominant negative or unknown functional consequence variants vs 58% for non-dominant negative and variants leading to haploinsufficiency, P<0.01; however, for LQT2 or LQT3 this association was not significant. An excess of disease-causing alleles of maternal origin, most pronounced in LQT1, was consistently found across ethnic groups. This observation does not seem to be linked to an imbalance in transmission of the LQTS subtype-specific grandparental allele, but to the potential degree of potassium channel dysfunction.


Long QT syndrome (LQTS) is an inherited arrhythmogenic syndrome with QT interval prolongation, syncope, and risk of sudden death from polymorphic ventricular tachycardia or ventricular fibrillation. Thirteen candidate genes are implicated, of which two potassium channel genes (KCNQ1, LQT1 [MIM 192500] and KCNH2, LQT2 [MIM 613688]) and a sodium channel gene (SCN5A, LQT3 [MIM 603830]) are the major genetic subtypes, accounting for ~80% of all genotyped LQTS patients.1

We previously reported transmission ratio distortion (TRD) in comprehensively genotyped European LQTS families, with an excess of variant carriers and female predominance.2 TRD is defined as a significant deviation from expected Mendelian ratios of allele inheritance, that is, a preferential transmission of a variant allele of particular parental origin. In consequence, this may lead to an unexpected higher frequency of disease in offspring. The mechanisms underlying TRD in LQTS are unclear. Whereas siblings should randomly receive grandparent origin alleles, Naumova et al3 reported grandparental transmission distortion in normal subjects for imprinted regions such as the 11p15.5 locus, where KCNQ1 is located. They suggested that the TRD in LQT1 could be linked to a locus-specific distortion over three-generation transmission.4 Accordingly, in this study we compared the grandparental origin of normal alleles in control families from the Centre d’Étude du Polymorphisme Humain (CEPH) with that of variant alleles in LQTS families.

On the other hand, several studies have demonstrated the expression of KCNQ1 voltage-gated potassium channels in the ovaries, in granulosa and trophoblastic cells.5, 6, 7 Thus, the voltage-gated potassium channel may have an important role in zygote maturation.

We followed maternal and paternal transmission of LQT1–LQT3 variant alleles in a large number of families from Europe (France, Germany and the Netherlands) and Asia (Japan), and explored the link between parental origin asymmetry and the severity of channel dysfunction.

Materials and methods


Genotyped LQT1–LQT3 families with known disease-causing variants, of at least two generations, were collected from three European centers (Paris, France; Münster, Germany; and Amsterdam, The Netherlands) and three Japanese centers (Shiga University of Medical Science, Kyoto University Graduate School of Medicine, and Suita National Cerebral and Cardiovascular Center). Genotyping in each center followed written informed consent and the ethical rules of each country. The subjects included in the study were as follows: LQTS patients carrying one variant, obligate carriers with or without documented cardiac sudden death, and non-carriers who were descendants of LQTS patients. If both parents carried a LQTS variant, their descendants were excluded. The cohort comprised 679 families (2748 carriers and 1034 non-carriers), of which 164 European families were analyzed previously2 and 515 families were new additions, which included the entire Japanese cohort. The variants have been submitted to the Leiden Open Variation Database (LOVD 3.0,, KCNH2, and SCN5A) with IDs given in Supplementary Tables S1 and S2 (LQT1, 49 181–49 512; LQT2, 49 515–49 793; and LQT3, 47 336–47 343, except 47 341, 47 469–47 495, and 49 027–49 060). A total of 83 sudden cardiac deaths occurred before the age of 40 years, 44 in LQT1 (19 male and 25 female), 28 in LQT2 (7 male, 21 female), and 11 in LQT3 (8 male and 3 female). The cases who died but not from sudden death were 8 females and 2 males.

Origin of the variant alleles

We determined the parental origin of the allele transmitted to proband and all carriers from each family without regard to phenotype. When Mendelian transmission is respected, variant alleles are transmitted from mothers and fathers in a 1:1 ratio. Furthermore, we evaluated the grandparental origin of variant alleles in three-generation LQTS families and the grandparental transmission of KCNQ1, KCNH2, and SCN5A loci markers in three-generation control families, to determine whether grandparental transmission distortion occurs. We then compared the grandparental origin of LQTS variant alleles with that of normal alleles. Figure 1 shows allele transmission in a large LQT1 family.

Figure 1

Parental and grandparental origin of variant alleles in a LQT1 family. In this pedigree, there are 25 carriers (18 women) of the R555C variant including three obligate carriers. The classification of the variant carriers is illustrated by colored symbols. (a) Parental origin of LQTS alleles transmitted to carriers. (b) Grandparental origin of the LQTS alleles transmitted to the carriers. N, not tested. Proband is indicated by an arrow, and open circles and squares are non-carriers.

Genotypes in control families

We studied 44 three-generation CEPH families, including the 31 families analyzed by Naumova et al3, and 13 additional kindreds (1353, 1354, 1356, 1357, 1358, 1447, 1451, 1454, 1458, 1459, 1463, 1477, and 1582). Markers within or near each of the genes were genotyped: D11S4088 and D11S1318 for KCNQ1, D7S2461 for KCNH2, and D3S1260 and D3S3521 for SCN5A. For some families, we also used data from the CEPH genotype database as shown in Supplementary Figure S1. Haplotypes allowed us to determine the grandparental origin for 2025 alleles including 712 KCNQ1 alleles, 703 KCNH2 alleles, and 610 SCN5A alleles (Supplementary Tables S3–S5). Statistical analyses were performed on the 31 families in Naumowa et al,3 on all the families, and after exclusion of some families when the origin of the four grandparental alleles could not be determined (for KCNQ1 locus, see Supplementary Table S6). Three families were excluded for KCNQ1, four for KCNH2, and eight for SCN5A.

Variant categories

To determine whether transmission distortion was linked to channel dysfunction, we classified KCNQ1 variants according to location and type.8 For channel dysfunction, missense variants were categorized according to either a dominant (>50% reduction in IKs current; n=24) or a non-dominant negative effect (n=9) on wild-type subunits, according to published heterologous expression studies. Other non-missense variants such as nonsense (n=6), splice site (n=7), and frameshift variants (n=22) with known or assumed loss of function were grouped as haploinsufficiency variants (Supplementary Table S1). The last group comprises mostly variants with unknown function including many missense (n=76), some splice site (n=7), and in-frame deletion variants (n=7).

For KCNH2, variants of the S5-pore-S6 caused the most severe phenotypes, mostly due to a dominant negative effect,9 and we therefore categorized KCNH2 variants into four classes: N-terminus, S1–S4, S5-pore-S6, and C-terminus (Supplementary Table S2). We also classified LQT2 variants according to variant type, as for LQT1. We did not analyze LQT3 variants, as the size of the group did not allow subdivisions and there is no evidence of risk stratification for SCN5A variants.

Statistical analysis

Differences between two groups were analyzed by the χ2-test or Fisher’s exact test where appropriate. Two-tailed exact binomial tests were used to assess whether the ratio of parental or grandparental alleles differed from 0.5 or 0.25, respectively. The odds ratios (ORs) with 95% confidence interval (CI) were estimated as a measure of association. Statistical significance was considered as P<0.05. Ages at sudden death were compared using an unpaired Student’s t-test.


Table 1 shows analysis of the genotyped cohort according to ethnicity, LQTS genes, carrier or non-carrier status, and gender, demonstrating female predominance among LQTS carriers (1563 LQTS females of 2748, 57 vs 43% males) but not among non-carriers where the sex distribution was nearly equal (524 females of 1034, 51 vs 49% males; P=0.0004). This was due to a larger number of female carriers in LQT1 and LQT2, but not in LQT3 families. The results were similar in both Japanese and European samples.

Table 1 Cohort according to LQTS genes, gender and countries

Preferential maternal transmission of LQTS alleles

Among the 479 LQTS probands, 61% inherited the variant from their mothers (maternal vs paternal: 292 alleles vs 187 alleles, P<0.0001). When all the carriers were considered, we observed the same asymmetry, with 61% alleles of maternal origin (1155 of 1892 variant alleles, P<0.0001). Sixty-six percent of LQT1 carriers received the variant from their mothers (602 of 910 carriers, P<0.0001), highly significant for children of both genders for the whole cohort, and in the subgroups from France, Germany, and Japan, but not from the Netherlands (Figure 2 and Supplementary Table S7). The preferential maternal transmission was less impressive for LQT2 carriers and for LQT3 carriers, but still significant (LQT2: 56%, P=0.0008 and LQT3: 57%, P=0.036), mostly due to a preferential transmission to female offspring (Supplementary Table S7). This results in a genotype-specific significantly larger maternal variant allele ratio among LQT1 carriers than for LQT2 and LQT3 (OR: 1.5, 95% CI: 1.3–1.9, P<0.0001 and OR: 1.5, 95% CI: 1.1–2.0, P=0.011).

Figure 2

Parental origin of variant alleles transmitted to probands or all carriers for each LQTS subtype.

Grandparental-allele transmission in CEPH and LQTS families

We determined the grandparental origin of alleles transmitted to grandchildren for the three LQTS genes in CEPH families. The allele ratios from each grandparent varied from 0.23 to 0.27, not significantly different from the expected value of 0.25 (Figure 3 and Supplementary Table S8). In contrast, comparison of grandparental LQTS allele ratios to control alleles for each locus, showed significant distortion for allele transmission in three generation LQT1 and LQT2 families (LQT1, P<0.0001 and LQT2, P<0.025, but not in LQT3 families (P=0.25; Figure 3). In LQT1, transmission to grandchildren of both genders was distorted, with an excess of maternal grandmother alleles (39%) and a reduction of paternal grandfather alleles (13%; P<0.0001), whereas in LQT2 families a significant discordant transmission was only found for female grandchildren compared with that for CEPH families (P=0.036; Supplementary Table S8).

Figure 3

Grandparental origins of LQTS alleles for each LQT subtype. The upper bar shows the allele distribution of the four grandparental origins in CEPH families and the lower bar shows the variant-allele distribution of four grandparental origins in LQTS.

Parental origin asymmetry and variant classification

We aimed to determine whether the observed distortion was dependent on ion channel dysfunction. We thus classified LQT1 variants into subgroups according to type, location, and their functional effect, (i) either leading to haploinsufficiency, (ii) with a proven dominant negative or (iii) non-dominant negative effect on wild-type alleles, or (iv) with unknown functional consequences (Figure 4 and Supplementary Figure S2). Interestingly, variants leading to haploinsufficiency such as splice, nonsense, frameshift variants, and missense variants with non-dominant negative effects, which both cause the mildest channel dysfunction, were found associated with less distortion (58% maternal transmission) compared with dominant-negative missense variants, and with other variants, a heterogeneous group, which mostly includes missense variants with unknown effects (68%, P=0.01).

Figure 4

Parental origins of LQT1 alleles and channel dysfunction. LQT1 variants were classified as non-missense variants, leading to haploinsufficiency, non-dominant negative missense variants, and dominant negative missense variants when their co-expression with wild-type channels induced >50% reduction in IKs current according to published patch clamp analyses. The last group corresponds to variants with unknown functional consequences. The maternal transmission compared between the four function groups under the assumption that the four maternal transmission are equal to 0.5 was significantly different (P<0.0001). For more explanations on classification, see Supplementary Table S1.

For LQT2, maternal transmission was higher than the paternal transmission only for missense variants (58 vs 42%, P=0.002). A similar distortion was observed for missense variants located in the pore region of the protein (S5-pore-S6) compared with other missense variants (Supplementary Figure S3).


This study provides information on parental and grandparental transmission in a large number of genotyped LQTS patients from different countries. We report an asymmetrical parental origin for variant LQTS alleles, with higher-than-expected maternal transmission and inheritance, especially for LQT1, in both European and Japanese families. In addition to this, we found that this is not linked to a LQTS subtype (locus-specific) grandparental origin allele transmission distortion, but probably associated with the severity of channel dysfunction. This suggests that the altered function of the potassium channel, especially KCNQ1, could modulate reproduction.

We had previously reported transmission distortion in LQTS families, demonstrating female predominance and an excess of carriers through segregation transmission in LQT1 and LQT2 families.2 Our data also suggested a tendency to more frequent transmission of LQTS alleles from mothers to daughters. Furthermore, Naumova et al3 reported in 2001 an asymmetrical transmission of the imprinted chromosome 11p15.5 region through meiosis in 31 CEPH families, with a significantly higher transmission rate of paternal grandfather alleles to sons and of maternal grandmother alleles to daughters. They suggested that grandparental origin-dependent transmission distortion is related to imprinting, an epigenetic factor that could be responsible for transmission distortion of several genes,3, 10 including KCNQ1, and thus could explain transmission distortion in LQT1.4 To study this hypothesis, we compared grandparental allele transmission in CEPH families for the LQT1–3 gene loci. We differed on two methodological points compared with the Naumova study: we studied more families and used highly polymorphic intragenic markers or markers more closely linked to the loci of interest. We found that the grandparental allele distribution was normal for the three loci whether we included all families or only those in which the four grandparental alleles were traced. This is concordant with a study on the Framingham heart cohort, which does not report distortion for chromosome 11.11 If we did not observe significant TRD for the KCNQ1 locus throughout the three generations in control families, this does not exclude a TRD for other loci on 11p15.5, such as INS-IGF2 locus, which is distant of 300 kb.12

In contrast, distribution analysis of grandparental variant alleles to grandchildren in LQTS families showed an obvious and significant excess of maternal grandmother LQTS alleles in LQT1 and LQT2 families, and a net reduction of paternal grandfather LQTS alleles, compared with values expected from Mendelian laws and CEPH family ratios. For LQT3 families, an increased ratio of grandmaternal alleles cannot be formally excluded; however, the variations did not reach significance, owing to the limited number of cases. The marked distortion observed in grandparental LQTS allele transmission correlates well with the more frequent transmission of maternal LQT1 or LQT2 alleles in nuclear families, and results from a cumulative effect during two generations.

The mechanism resulting in the higher transmission rate of maternal LQTS alleles, highly significant in LQT1 families, is not known. A reduction in the number of male carriers of reproductive age, compared with female carriers, could induce female predominance and higher maternal transmission. However, in LQTS, even if gender differences have been demonstrated, they do not support this theory. At adult age, LQT1 and LQT2 women have longer QT intervals and a higher risk of life-threatening cardiac events than men.13, 14 By contrast, before puberty, the incidence of arrhythmia is higher and occurred at a younger age in boys than in girls,15 but the numbers of sudden deaths are similar between men and women LQTS patients in most of the studies, as it was in our cohort, where even more females than males died from non-arrythmogenic causes. Over several decades, β-blocker therapy has been used to prevent sudden death in LQTS patients, and intrauterine or infancy deaths due to LQTS remained exceptional.16 Even if it is unlikely that premature death in males could explain the sex imbalance and the transmission distortion among patients in our population, we cannot exclude that fetal wastage of embryos could occur at very early stage of development, as 50–75% of all human conceptions are lost before the first missed menses.17, 18 It is known that abnormal imprint resetting could lead to early death of embryos19 and KCNQ1 is a paternally imprinted gene. Nevertheless, it is difficult to conceive the specific loss of male vs female embryos.

In contrast to other imprinted genes, for which only one of the two parental alleles is expressed in tissues during all the life, KCNQ1 paternal imprint is reversed during development, and both maternal and paternal alleles could be detected in most of the tissues. This was shown in mouse20 and a partial erasing was reported in tissues from human embryos, especially in hearts.21 To our knowledge, no other study was performed to determine whether the KCNQ1 paternal imprint is fully erased or not in all human tissues. Nevertheless, it is clear that the cardiac phenotype of LQT1 sibs are similar regardless of the gender of parents with a variant in KCNQ1 as shown for the Japanese cohort (Supplementary Table S9). This suggests a normal expression of both alleles in the heart.

We rechecked in the enlarged pool of families, the transmission to fully genotyped offspring applying correction for single ascertainment22 as in our earlier study.2 Our previous observation in LQT1 families that an excess of carriers is only present in descendants from affected mothers, but not from affected fathers, was confirmed (Supplementary Table S10). We postulate that the normal transmission of paternal LQT1 variants is probably due to the repression of paternal KCNQ1 allele expression by imprinting in spermatozoids and early embryogenesis. By comparison, in LQT2 and LQT3 families, there was also an excess of carriers but without significant difference between maternal and paternal transmissions; these genes are not in imprinted loci. The excess of maternal variant alleles in LQT1 was thus probably related to the sole expression of the maternal alleles and suggested that the LQT1 variants may confer a sex-differential reproduction rate. Following this hypothesis, our objective was to determine whether the degree of ion channel dysfunction could influence preferential allele transmission, and this was clearly observed for LQT1 variants. We found a less pronounced distortion for the heterozygous variants recognized to be associated with the mildest dysfunction. This subgroup consisted of variants leading to haploinsufficiency such as nonsense, frameshift, and splice variants. Conversely, we found a maternal transmission rate of 67% for the dominant negative variants, which are associated with the most severe channel dysfunction, compared with 58% for non-dominant negative variants.8

Thus, the degree of transmission distortion in LQTS may vary among populations depending on variant type. This may explain the absence of significant female predominance/transmission distortion recently reported in a Norwegian population where most of the identified LQT1 variants led to haploinsufficiency and a moderate channel dysfunction.23

Nevertheless, there is no obvious link between the increased maternal transmission and the female predominance, these two observations may result from different mechanisms involving oocytes, spermatozoids, or other maternal tissues. As KCNQ1 is expressed in numerous organs and in different types of cells, variants that alter myocardial repolarization might also have important effects in other tissues and at early stages of development such as fertilization in which ion channels are crucially important.24

Differential co-assembly of KCNQ1 with single transmembrane KCNE β-subunits in different cell types gives rise to a variety of biophysical properties, thus endowing distinct physiological roles for KCNQ1–KCNEx complexes.6, 20, 25 Some of them are well-known. In the heart, KCNQ1 co-assembles with KCNE1, the major cardiac β-subunit, to form the slowly activating K+ channel sensitive to adrenergic regulation.8, 26 In contrast, co-assembly of KCNQ1 with KCNE3 produces a current with nearly instantaneous activation.27 In colonic crypts, these KCNQ1:KCNE3 channels mediate basolateral K+ recycling required for Cl secretion and their expression is regulated by estrogens.28 In the stomach, KCNQ1:KCNE2 regulates acid secretion.29 Interestingly, KCNQ1 is also expressed in porcine and human granulosa cells, as well as in large follicles where it could have a role in follicular maturation.5, 30 In the ovaries, acetylcholine elevates intracellular calcium levels, thereby opening a calcium-activated potassium channel (BKCa), an action resulting in membrane hyperpolarization.31 This latter event could allow activation of other voltage-dependent ion channels, which are linked to steroid production.32 Besides, KCNQ1 is regulated by acetylcholine, a novel intraovarian signaling molecule.5 In cultured granulosa cells, inhibition of K+ channels by a KCNQ channel blocker, XE991, inhibited gonadotropin-stimulated steroid production and increased cell proliferation.5 This suggests a crucial role for KCNQ channels in the follicle. The effect of a KCNQ1-specific blocker has not been studied so far; however, if it also increases granulosa cell proliferation, this may contribute to the maturation of oocytes carrying a LQT1 variant, and thus the maternal transmission and the observed TRD in favor of carriers in the families.

Classification of KCNH2 variants based on dysfunction remains difficult, as many missense variants affect to a variable level channel trafficking and expression when others impair biophysical properties.33, 34 We found more maternal than paternal transmission of LQT2 variants but the differences were smaller than for LQT1 variants. The ratios were of 0.58 for missense variants and 0.54 for variants leading to haploinsufficiency, and a similar distortion was observed for missense variants located in the pore region of the protein (S5-pore-S6) compared with other missense variants. The KCNH2 channels are developmentally regulated and may also have a role in early mouse embryogenic development.35

It is noteworthy that although we postulate that the loss-of-function of the cardiac potassium channels could induce transmission distortion and contribute to female predominance in LQTS, a marked male predominance, up to 80%, has been observed among patients with a short QT syndrome.36, 37 This syndrome is caused by gain-of-function variants in the same channels where loss-of-function variants lead to LQTS, but only in a limited number of cases. It is tempting to suggest a possible role for channel dysfunction in this male predominance, but this must be tempered by the fact that most of the genetic background of this syndrome has not been elucidated.

Further studies on larger cohorts are needed to determine whether gain- or loss-of-function SCN5A variants could also influence parental transmission and to elucidate the origin of the preferential maternal transmission of KCNQ1 and KCNH2 variants.

Study limitations

This study is a retrospective study and has several limitations. The variability in size of the families could be a limitation. Large families were collected to study allele transmission across three generations, but small families were also included, especially those from Japan. It is interesting to note that female predominance among carriers and preferential maternal transmission were both observed in this Asian population for LQT1 and LQT2. Most of the LQT3 families, generating a smaller cohort than for LQT1 and LQT2, were from the Netherlands and harbored the same founder variant, c.5385_5387dup (p.(Tyr1795_Glu1796insAsp)). The Netherlands LQT1 and LQT2 cohorts were too small to show true differences from those of the other countries.


From our multi-national cohort of LQTS families, there was an excess of grandmaternal and maternal variant alleles with the strongest effect for LQT1. We favor the hypothesis that the dysfunction of potassium channels could have a major role in preferential maternal transmission in LQTS.


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We are grateful to Dr Graham Macdonald and late Professor Josué Feingold for helpful discussions; Dr Megumi Fukuyama for the collection of Japanese LQTS families; Dr Sven Zumhagen and Dr Birgit Stallmeyer for support in German LQTS family sampling; and Dr Rachel Peat for article proofing. ES-B was supported by the Fondation Leducq, Paris, and the DFG (Schu1082/3-1 and 3-2) and the Interdisciplinary Center for Clinical Research (IZKF; Schu1/011/12) of the Medical Faculty of the University of Münster. This work is also supported by a Grant-in-Aid for Scientific Research from JSPS (HI).

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Correspondence to Hideki Itoh.

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