Main

Mitochondria, the energy-producing organelles of eukaryotes, generate cellular energy in the form of ATP (adenosine triphosphate) coupling substrates oxidation and the proton gradient established along with electron flow through the electron transfer chain of the respirasome (complexes I, III, and IV) to the ATP synthesis by the F1FO-ATP synthase (complex V).1, 2, 3 Mitochondria also play a key role in apoptosis and related forms of cell death.4, 5 Mitochondrial fission, inner membrane permeabilization (IMP; leading to mitochondrial transmembrane potential (ΔΨm) loss and matrix cofactor release), rearrangements of mitochondrial lipids, and outer membrane permeabilization (OMP; resulting in the release of, and/or access to, intermembrane space proteins, including cytochrome c) are pivotal events in the apoptotic process.6, 7, 8 As a corollary, many viruses have evolved to encode proteins that directly target mitochondria for modulating apoptosis.9, 10

The human immunodeficiency virus type 1 (HIV-1) trans-activator of transcription (Tat) protein is an important factor in the HIV-induced pathogenesis of AIDS, contributing to immune dysfunction, Kaposi's sarcoma, HIV-associated dementia, and cardiomyopathy.11, 12 In infected cells, Tat transactivates virus gene transcription and is essential for replication. During acute infection of T cells by HIV, Tat released in the stromal microenvironment of infected cells can bind and/or be efficiently taken up by most cell types.13 Although antiretroviral therapy has proven efficacy to reduce viral load, once proviral DNA is formed, such treatment does not prevent production of early viral proteins Tat, Rev, and Nef.14, 15 The outcome of Tat activity is dependent on its concentration, the cell types involved, and whether activity is mediated within infected cells or through paracrine-like effect to uninfected bystander cells.16

Several in vitro studies suggest that Tat may interfere directly or indirectly with mitochondrial functions. For instance, Tat-expressing cell lines have reduced expression of the manganese superoxide dismutase (Mn-SOD), a mitochondrial enzyme that is part of the cellular defense system against oxidative stress.17 Under low serum conditions, Tat translocation from the nucleus to the mitochondria, correlating with ΔΨm dissipation, reactive oxygen production, and apoptosis, was also shown in Tat-expressing cell.18 Tat may also bind tubulin and polymerized microtubules, leading to the alteration of microtubule dynamics and activation of a mitochondria-dependent apoptotic pathway.19, 20 Using recombinant HIV-1 Tat1-72 protein, Norman et al.21 reported that Tat can induce a decrease in free mitochondria calcium in primary neurons, and inhibits mitochondrial complexes III and IV in mitochondria isolated from juvenile rat brain. Moreover, transgenic mice expressing Tat selectively in cardiac myocytes present cardiac dysfunction associated with severe mitochondrial damage.22 Based on these premises, we investigated if pure, biologically active, synthetic Tat may directly interact with mitochondria from different tissues, and which mitochondrial target(s) Tat would possibly hit.

Results

Full-length Tat synthesis

The full-length [1-86] Tat protein is synthesized using the native chemical ligation (NCL) method initially introduced by Dawson et al.23 The reaction is performed between two fully unprotected peptides, the N-terminal segment having a C-terminus thioester and the C-terminal segment having an N-terminus cysteine residue (Figure 1a). The first step is a trans-thioesterification of the Cα thioester by the thiol function of the Cys residue, and is followed by a spontaneous S to N acyl shift to obtain a native amide bond. The HPLC profile of the reaction products after completion is shown in Figure 1b. The Tat protein is further isolated at a purity above 95% (Figure 1c) and is characterized by mass spectrometry (Figure 1d). The synthesis of this protein by a classical solid-phase protocol has already been reported.24 The chemical ligation used in the present study represents an alternative and convenient way to obtain a highly purified, well-characterized Tat protein in relatively large amounts (up to 100 mg). This synthetic Tat (sTat) was shown to be fully functional in transactivation assays.25, 26, 27

Figure 1
figure 1

Tat [1-86] preparation. (a) Principle of full-length Tat synthesis by NCL. (b) HPLC profile of the reaction mixture after 36 h and before purification. Gradient 5 – 20′ – 65% B, col. C4, 1.2 ml/min, 220 nm. (c) HPLC profile of [1-86]Tat after purification. Gradient 5 – 20′ – 65% B, col. C4, 1.2 ml/min, 220 nm. The purity was 97.2%. (d) Mass spectrum of [1-86] Tat. Mr observed: 9753.2 (M+1), Mr calculated: 9751.6

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Tat[1-86] induces swelling of isolated mitochondria

When added to mouse liver mitochondria, submicromolar concentrations of synthetic Tat[1-86] (Figure 2a) induce a rapid dose-dependent mitochondrial swelling (Figure 2b). The effect of free holo-Tat on isolated mitochondria is fully mimicked by Tat[22-86] and Tat[30-86], partly by Tat[48-86], but is not observed with Tat[30-61], Tat[44-61] and Tat[61-86], (Figure 2c), indicating that main functional domains (i.e., the core region [38-48], the basic region [49-59], the glutamine-rich region [60–72], and the C-terminus) are required for efficient Tat-induced mitochondrial swelling. Permeability transition pore (PTP) inhibitors including cyclosporin A (CsA, a cyclophilin D ligand), ADP, and bongkrekic acid (BA, an adenine nucleotide translocase ligand) are inefficient to protect mitochondria from Tat-induced swelling (Figure 2d). Accordingly, when Tat is added to liposomes containing a PTP-enriched fraction,28, 29 it does not induce proteoliposome permeabilization (Supplementary Figure S1). Thus, in contrast to Vpr, another HIV-1-encoded mitochondrial membrane permeabilization (MMP) inducer,29, 30 Tat-induced MMP is not related to the PTP.

Figure 2
figure 2

Tat-induced swelling in liver isolated mitochondria. (a) Sequence of full-length Tat[1-86] (HIV-1 Lai) and Tat derived peptides. (b) Dose/time response of Tat[1-86]-induced swelling. Isolated mouse liver mitochondria were exposed to full-length Tat at the indicated concentrations and mitochondrial swelling (measured as 90° light scattering at 545 nm) was monitored continuously. (c) Comparative analysis of the effect of Tat-derived peptides on mitochondrial swelling. Isolated mouse liver mitochondria were exposed to the indicated concentrations of Tat-derived peptides. Mitochondrial swelling was monitored for 30 min. Percentages of mitochondrial swelling were calculated as described under Materials and Methods. Data are means (±S.D.) of three independent experiments. (d) Evaluation of PTP-related inhibitors on mitochondrial swelling. Liver mitochondria were exposed to Tat[1-86] (0.3 μM; 30 min) in the presence or absence (Co.) of the following compounds (added 5 min before Tat): cyclosporin A (CsA; 30 μM), ADP (1 mM), bongkrekic acid (BA; 50 μM), Bcl-2 (400 nM), Bcl-XL (400 nM), or DIDS (5 μM). Histograms represent mean values (±S.D.) of five independent experiments. *P<0.05. (e) Time course follow-up of absorbance characteristics of mouse isolated liver mitochondria in the absence of Co. and the presence of either Tat[1-86] or Tat +5 μM DIDS. Excess of DIDS was removed by centrifugation before Tat was added at the final concentration of 0.3 μM. (f) Ultrastructure of Tat-treated mitochondria. Representative electron micrographs of isolated liver mitochondria treated or not (Co.) with Tat[1-86] (30 min; 0.15 μM) and optionally pre-treated with DIDS (5 μM; 1 min before Tat addition)

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Tat-induced swelling of liver mitochondria is reduced by pretreatment of mitochondria with the broad-spectrum anion channel inhibitor 4,4′-diisothiocyanostilbene-2,2′-disulfonic acid (DIDS), but not with recombinant Bcl-2 and Bcl-XL (Figure 2d). Noticeably, the protective effect of DIDS is still observed if DIDS-treated mitochondria are washed before Tat addition (Figure 2e). Ultrastructural studies of isolated mitochondria confirm that, in sucrose buffer, Tat addition readily induces an outer membrane disruption of liver mitochondria, resulting in numerous protrusions of the inner membrane. DIDS pretreatment strongly prevents these Tat-induced morphological changes in liver mitochondria (Figure 2f). Similar results were found with synthetic Tat was added on mitochondria isolated from mice heart (Figure 3), indicating that Tat-induced mitochondrial swelling is not restricted to liver mitochondria, and suggesting a common PTP-independent mechanism. However, under our experimental conditions, and using two different protocols for isolation, we have found that brain mitochondria were not sensitive to calcium-induced (or Tat-induced) swelling (data not shown).

Figure 3
figure 3

Tat-induced swelling in heart-isolated mitochondria. Isolated mouse heart mitochondria were exposed to full-length Tat[1-86] 0.6 μM and mitochondrial swelling (measured as 90° light scattering at 545 nm) was monitored for 30 min. When indicated, mitochondria were preexposed for 5 min in the presence or absence of the following compounds: cyclosporin A (CsA; 30 μM), ADP (1 mM), bongkrekic acid (BA; 50 μM), Bcl-2 (400 nM), or DIDS (5 μM). Then, mitochondria were incubated with Tat[1-86] (0.3 μM; 30 min). Percentages of mitochondrial swelling (left panel) were calculated as described under Materials and Methods. Positive control was defined by the addition of 50 μM CaCl2. Histograms represent mean values (±S.D.) of three independent experiments

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Reportedly, Tat can also trigger calcium release from mitochondria,21 possibly through a ryanodine receptor (RYR)-dependent pathway.31 To investigate the possibility of a direct interaction with Tat at the mitochondrial level, we pretreated isolated mitochondria with ruthenium red, a RYR blocker also known to inhibit the mitochondrial Ca2+ uniporter. Ruthenium red blocked calcium-induced mitochondrial swelling but had no effect against Tat-mediated MMP in liver (Figure 2d) and heart mitochondria (Supplementary Figure S2).

Characterization of Tat-induced ΔΨm and cytochrome c release in isolated mitochondria

Real-time and fixed-time flow cytometry analysis of ΔΨm32 indicates that full-length Tat induces a rapid ΔΨm loss in liver mitochondria, heart mitochondria, and brain mitochondria as well (Figures 4a and b). Tat-induced ΔΨm loss is inhibited by DIDS in mitochondria isolated from these three tissues (Figure 4b). Contrary to DIDS, PTP inhibitors and recombinant Bcl-2 are unable to hamper Tat-induced ΔΨm loss (Figure 4c). We also found that Tat-induced ΔΨm loss is associated with DIDS-sensitive cytochrome c release (Figures 3d and e). As mitochondria isolated from heart and liver do not express Bax but do express low and high quantities of Bak, respectively (Supplementary Figure S3), we also investigated whether Bax-inhibiting peptide (BIP) or Bax channel inhibitor (BCB; which inhibits Bax and Bak oligomerization in the mitochondrial outer membrane33) might affect Tat-induced cytochrome c release (Figures 4f and g). Neither BIP nor BCB could modify Tat-induced cytochrome c release. Taken together with the absence of the effect of Bcl-2 (Figures 2d and 4c), one can suggest that Tat-induced MMP might be independent of the canonic Bax/Bak-mediated mitochondrial permeabilization pathway.

Figure 4
figure 4

Permeabilization of inner and outer membranes induced by Tat in liver, brain, and heart mitochondria. (a) Real-time flow cytometry analysis of ΔΨm in Tat-treated mitochondria. Basal fluorescence of JC-1-loaded liver mitochondria was recorded for 2 min. The organelles were then exposed (arrow) or not (Co.) to 0.3 μM Tat[1-86]. The arrow indicates the time of Tat addition. Time-Fl-2 (orange fluorescence because of J-aggregate formation) dot plots are shown. (b) Fixed-time flow cytometry comparative analysis of ΔΨm in liver, heart, and brain mitochondria. Mitochondria were exposed to Tat (Tat concentration as in (a)) for 30 min in the absence (black bars) or presence (gray bars) of DIDS (5 μM; added 1 min before Tat), and compared with untreated mitochondria (white bars). Histograms represent mean values (±S.D.) of three independent experiments. **P<0.01. (c) Tat-induced ΔΨm loss in heart-isolated mitochondria. Isolated mouse heart mitochondria were exposed to full-length Tat[1-86] (0.6 μM) and ΔΨm loss (fluorescence dequenching of Rhodamine 123) was monitored for 30 min by spectrofluorimetry. When indicated, heart mitochondria were preexposed for 5 min to Tat the following compounds: cyclosporin A (CsA; 30 μM), ADP (1 mM), bongkrekic acid (BA; 50 μM), Bcl-2 (400 nM), or DIDS (5 μM). Percentages of ΔΨm loss were calculated as described under Materials and Methods. Positive control was defined by the addition of 50 μM ClCCP. Histograms represent mean values (n=3 ±S.D.). (d–g) Tat-induced cytochrome c release from isolated mitochondria. (d and e) Western blot analysis of Tat-induced cytochrome c release. Liver (d), brain (d), and heart (e) isolated mitochondria were incubated or not for 5 min with DIDS (5 μM; RT) centrifugated (to remove free DIDS) and mitochondrial pellet were resuspended and incubated 30 min at 37°C in the presence or absence of 0.15, 0.3, 0.6, and 1.2 μM Tat[1-86]. Then, supernatants from mitochondria (6800 g for 10 min; 4°C) were subjected to immunodetection of cytochrome (cyt) c. (f and g) Quantitation of cytochrome c release. Isolated liver (f) and heart (g) mitochondria were treated with 0.6 μM of the synthetic Tat protein and mitochondrial supernatant was subjected to ELISA assays, given in percentage of release compared with 20 μg/ml alamethicin (Ala.; 100% of cytochrome c release) (n=3 independent experiments)

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Tat inhibits substrate oxidation in mitochondria isolated from heart, brain, and liver

Compared with untreated organelles (Figure 5a, traces a, e, g), mitochondria preincubated with Tat[1-86] (Figure 5a, traces b, f, h) exhibit a severe deficiency in succinate oxidation. Adding cytochrome c to Tat-treated mitochondria oxidizing succinate does not stimulate the rate of oxygen uptake (Figure 5a, traces b, f, h), suggesting that Tat inhibits respiratory chain function by an additional mechanism. Noticeably, DIDS partly prevents Tat-induced succinate oxidation defect and permits a full restoration of oxygen consumption by exogenous cytochrome c (Figure 5a, trace c). In contrast, RYR appears not to be implicated as we observed that respiratory control ratios (RCRs) measured using succinate as a substrate in heart mitochondria did not differ in the absence (RCR: 2.7) or presence (RCR: 2.8) of 1 μM ruthenium red (Supplementary Figure S4). Tat-induced inhibition of substrate oxidation is dose dependent (Figure 5b). Interestingly, up to 5 μM Tat, the addition of exogenous cytochrome c reverses Tat-induced inhibition of substrate oxidation (Figure 5b). This suggests that Tat-induced OMP and IMP may be two independent/successive events.

Figure 5
figure 5

Oxidative properties of purified mitochondria exposed to Tat. (a) Oxygen consumption upon addition of the indicated reagents. Trace a: liver mitochondria (no pretreatment). Trace b: Liver mitochondria pretreated for 3 min with 10 μM Tat. Trace c: liver mitochondria pretreated 1 min with 10 μM DIDS, then 3 min with 10 μM Tat. Trace d: liver mitochondria pretreated with 10 μM DIDS only. Trace e: heart mitochondria (no pretreatment). Trace f: heart mitochondria pretreated for 3 min with 10 μM Tat. Trace g: brain mitochondria (no pretreatment).Trace h: brain mitochondria pretreated for 3 min with 10 μM Tat. Numbers along the traces are nmol O2 consumed per min per mg protein. (b) Influence of Tat concentration on oxidative activities of liver, heart, and brain mitochondria. Oxygen consumption by purified mitochondria was measured after addition of succinate (as in (a)). Mitochondria were treated 3 min with the indicated concentrations of Tat. Then, oxygen uptake by purified mitochondria was measured after addition of succinate (as in (a)) in the absence (gray bars) or presence of (black bars) of exogenous cytochrome c. Histograms represents % mean respiratory activity (n=3; variability was <5%). Calculations are as described under Materials and Methods

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Full length HIV-1 Tat is a cytochrome c oxidase (COX) inhibitor

The activity assays of complexes I–IV in brain mouse homogenate show that complex IV (but not electron transfer complexes I– III) is strongly inhibited (>95%) by 1 μM Tat[1-86] (Table 1). To determine if full-length Tat inhibits COX activity in liver mitochondria, we evaluated the effects of Tat[1-86] on the ability of COX to oxidize exogenous cytochrome c in permeabilized organelles.34 In order to avoid medium-induced artifacts, experiments were performed in three different media classically used for swelling, respirometry, and COX enzymatic activity evaluations, respectively. In lauryl maltoside-treated liver mitochondria, Tat[1-86] strongly inhibits cytochrome c oxidation whatever the medium considered (Figure 6a, panel 1), and this effect is not prevented by DIDS pretreatment (Figure 6b, panel 2). In contrast, Vpr52-96, another MMP-inducing HIV-related peptide, does not induce COX inhibition (Figure 6a, panel 3). Shorter Tat-derived peptides do not (Tat[44-61] and Tat[61-86]), or only poorly (Tat[30-86]), inhibit mitochondrial COX (Figure 6a, panel 4). COX inhibition by full-length Tat is not tissue specific as a dose-dependent COX inhibition is also observed in (lauryl maltoside) permeabilized mitochondria isolated from heart and brain (Figure 6b). We next determined the kinetics properties of COX in liver mitochondria under our experimental conditions (Vmax=73 (±8)/s; Km (red cyt c)= 1.95 (±0.8) μM). Tat addition to isolated liver mitochondria reduces Vmax (Vmax [Tat]=35 (±4)/s) without any effect on Km (red cyt c), suggesting that Tat does not directly compete with cytochrome c (Figure 6c). Finally, Tat[1-86] is able to inhibit COX activity in homogenates from various human tissues including liver, heart, brain, and skeletal muscle (Supplementary Figure S5).

Table 1 Tat effects on respiratory chain complex activities
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Figure 6
figure 6

Cytochrome c oxidase inhibition by Tat protein and Tat-derived peptides in permeabilized mitochondria. (a) Assay of cytochrome c oxidase (COX) activity in detergent-treated (2.5 mM dodecylmaltoside) mouse liver mitochondria. Part 1: Inhibition of cytochrome c oxidation in permeabilized mitochondria induced by the addition of 1 μM Tat, versus untreated mitochondria (Co.). Experiments were performed in three distinct media, namely COX (M1), swelling (M2), and electrode (M3) media. Part 2: Absence of protective effect of 5 μM DIDS against COX inhibition by 1 μM Tat[1-86]. Part 3: Similar experiment with 1 μM of the negative control Vpr 52–96. Part 4: Effects of 1 μM Tat[1-86] and Tat-derived peptides (30–86, 44–61 and 61–86) on COX activity (n=3). (b) Inhibition of COX activity in mouse liver, brain, and heart mitochondria by increasing concentration of Tat[1-86]. DIDS was added at the indicated concentration. (c) Km (red Cyt c) calculation in the presence or not of full-length Tat

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Discussion

In the present study, we have investigated the potential direct effect of synthetic Tat protein (from HIV-1 Lai isolate; clade B) on mitochondria that could trigger pathogenic events. Based on the evidences obtained with isolated mitochondria (liver, heart, and brain), it appears that the HIV-1-encoded Tat[1-86] protein directly interacts with mitochondrial membranes, triggering PTP-independent ΔΨm loss and cytochrome c release. Under our experimental conditions, Tat also induces mitochondrial swelling in liver and heart mitochondria. All these Tat-induced MMP events are prevented by the general anion channel blocker DIDS but not by PTP inhibitors or Bax/Bak inhibitors.

We also report for the first time a severe decrease of succinate oxidation upon Tat addition to intact mitochondria from heart, brain, and liver mice. Interestingly, when Tat is added to these mitochondria after disruption, or to various human homogenates (liver, heart, brain, and skeletal muscle), a severe and specific COX inhibition is observed, whereas other mitochondrial respiratory chain complexes (I–III) are not affected. A previous report showed that recombinant HIV-1 Tat[1-72] could induce a slight decrease in rat brain complex III and IV activities.21 Our results do not confirm any effect of Tat on complex III activity, but agree on, and widen (to liver, brain, and heart), in mice and humans, the existence of a direct COX inhibition by HIV-1 Tat. The use of different lengths (1-72 versus 1-86) or sources of Tat might have contributed to discrepancies at the level of complex III. As we have found that iron–sulfur (Fe-S) centers containing enzymes of the respirasome are not affected by Tat, it is highly improbable that Tat could directly induce ROS production from isolated mitochondria. However, we cannot exclude that ROS production could occur as a consequence of mitochondrial dysfunction and electron leak from the respiratory chain.35

Huo et al.20 recently described an interesting mechanism in Jurkat T cell lines, where Tat is acetylated at Lysine 28, and thereby induces Bim translocation from microtubules to mitochondria, and favors apoptosis.19 Although it is plausible that such mechanism could occur in other tissues, we show clearly that the direct effect of Tat on isolated mitochondria does not require such modification as the Tat effects we have observed are reproduced with Tat[30-86].

A number of COX inhibitors have been previously described, including the well-known sodium azide, cyanide, carbon monoxide, nitric oxide,36, 37, 38 D-2-hydroxyglutaric acid,39 4-hydroxy-2-nonenal,40 cephalosporins,41 or Alzheimer's amyloid precursor protein 695.42 However, HIV Tat is the first viral protein inhibiting COX. The respirometry experiments show that Tat effect with concentrations up to 5 μM can be essentially counterbalanced by exogenous cytochrome c addition. This indicates that the decrease of oxygen uptake observed under our experimental conditions is initially because of OMP and loss of cytochrome c rather than COX inhibition. Taken together, these experiments suggest that when Tat reaches mitochondria (at the doses studied), it permeabilizes outer membrane to cytochrome c but does not initially target COX. Under our in vitro conditions, inhibition of this latter complex by Tat only happens after disruption of mitochondrial membranes. Accordingly, in situ studies of immunochemistry-based detection of COX activity in Tat-treated lymphocytes and neurons indicate that, when added at sublethal concentrations, Tat does not affect COX activity in intact cells. In the context of HIV infection, long-term chronic exposures to Tat might lead to a progressive and local mitochondrial accumulation and result in COX inhibition in the absence of, or before, OMP.

HIV infection is associated with profound cellular alterations including immune dysfunctions and neurological and cardiac complications.43, 44, 45 HIV Tat has been involved in many aspects of AIDS pathogenesis43, 44, 45 including apoptosis of different cell types.12, 46, 47, 48 Hence, Tat cytotoxicity may be (at least in part) related to direct MMP induction, possibly triggering a cytochrome c-dependent apoptotic pathway. Other HIV-1 proteins, Vpr, Env, and PR, may also (directly or indirectly) affect mitochondrial function; Vpr via a direct PTP interaction,29 PR by cleaving procaspase-8 and/or Bcl-2,49, 50 and Env by a cell-to-cell-mediated signaling pathway leading to Bax activation.51, 52, 53, 54 This hints at the possibility that several apoptogenic HIV-1 proteins – Vpr, Tat, Env, and PR – cooperate at the mitochondrial level, contributing to HIV-related cell damage in lymphocytes,55 neurons, and cardiomyocytes.

Materials and Methods

Animals

Mice were housed with a 12-h light/dark cycle. Free access to a standard laboratory chow diet and drinking water was provided. Experimental procedures were conducted according to the European Community guidelines for the care and use of experimental animals. Mice experimentation conducted at Theraptosis were approved by the local animal ethical committee (Biocitech, Romainville, France). Mice experimentation that was done at Inserm U676 was approved by the animal ethical institutional review committee, according to the INSERM guidelines, and was carried out in accordance with the European Community guidelines for the care and use of experimental animals.

Mitochondria isolation and purification

Liver and heart mitochondria were isolated from 4- to 6-week-old BALB/c mice (IFFA CREDO, Saint-Germain sur l′Arbresle, France). Liver mitochondria were prepared by standard differential centrifugations followed by Percoll purification as described previously.32 Mice hearts were minced and homogenized with a Dounce homogenizer in buffer containing 300 mM sucrose, 5 mM TES (N-[tris(hydroxymethyl)methyl]-2-aminoethanesulfonic acid, 2-[(2-hydroxy-1,1-bis(hydroxymethyl)ethyl)amino]ethanesulfonic acid) pH 7.2, 0.2 mM EGTA, and 1 mg/ml BSA. The suspension was centrifuged at 800 g for 10 min and the resulting supernatant at 10 000 g for 10 min at 4°C. The pellet was resuspended in homogenization buffer before to be layered on a three-phase percoll density gradient. After centrifugation (for 10 min at 8740 g), mitochondria were collected from the lower interface and washed in homogenization buffer by centrifugation at 10 000 g (10 min). Brain mitochondria were isolated according to previously described protocols.56, 57 Isolated mitochondria were subjected to various assays for integrity and functionality as described.32 Alternatively, mitochondria were isolated from mouse heart, brain, and liver by differential centrifugation (according to Musatov et al.40), and used in spectrophotometry, spectrofluorimetry, and respirometry assays. We did not find significant differences in most read-outs when using the alternative purification protocols as compared with the percoll density gradient-based purifications. Only flow cytometry-based assays strictly requested gradient-based purification.

Human tissue

Human liver, brain, and heart homogenates were prepared from 5 to 10 mg post-mortem tissues for diagnostic purpose with informed consents. Microaliquots (10–30 μl left after diagnostic investigation) used in this study presented normal activity of the respiratory chain complexes.34

Synthesis of full-length Tat and Tat peptides

Tat[1-86] protein from HIV-1 Lai strain was prepared using the NCL method introduced by Dawson et al.,23 as described in Supplementary Materials and Methods. Other Tat fragments used in this study, namely Tat [30-86], Tat [48-86], Tat [61-86], Tat [30-61], and Tat [44-61], were assembled using solid-phase Fmoc chemistry, purified, and analyzed as described for the Tat [22-86] fragment.58

Reagents

ADP, BA, ruthenium red, DIDS, and carbonyl cyanide m-chlorophenylhydrazone (mClCCP) were purchased from SIGMA (Saint Quentin Fallavier, France), CsA from BIOMOL Research Laboratories (Le Perray-en-Yvelines, France), and the recombinant proteins Bcl-2 and Bcl-xL from Oncogene Research products (Oncogene Research Products, Merck, VWR International, Fontenay-sous-Bois, France). BCB ((6)-1-(3,6-dibromocarbazol-9-yl)-3-piperazin-1-yl-propan-2-ol) was purchased from Calbiochem (San Diego, CA, USA) and BIP-V5 (H-Val-Pro-Met-Leu-Lys-OH; cat. no. 196810) was purchased from Calbiochem (Nottingham, UK).

Detection of large amplitude swelling and ΔΨm loss

Mitochondria were resuspended in a buffer, referred as the swelling buffer, containing 0.2 M sucrose, 5 mM succinate, 10 mM MOPS (3-[N-morpholino]-propanesulfonic acid), 1 mM KH2PO4, 2 μM Rotenone, and 10 μM EGTA at pH 7.4. Large amplitude swelling was determined by measuring absorbance at 545 nm (A545). Percentages of specific swelling were calculated as follows: (Ainit−AReagent) × 100/(Ainit−A Ca2+), where ACa2+, AReagent, and Ainit correspond to the absorbance value obtained for CaCl2-treated, reagent-treated, and pretreated mitochondria respectively. ΔΨm loss was assessed by 5,5′,6,6′,-tetracholoro-1,1,3,3′-tetraethylbenzimidazolylcarbocyanine iodide (JC-1; Molecular Probes, Saint Aubin, France) incorporation followed by fixed- and real-time flow cytometry analysis.32 Alternatively, mitochondrial swelling and ΔΨm were analyzed by spectrophotometry and spectrofluorimetry in 96-well plates (22 μg/ml) as described.59 Briefly, isolated mitochondria were incubated in swelling buffer supplemented with 1 μM rhodamine 123 (Rh123; Molecular Probes). Then, absorbance at 545 nm and Rh123 fluorescence (excitation 485 nm, emission 535 nm) were recorded during 30 cycles of 1 min using a fluorescence multi-well plate reader (Infinite 200, Tecan, Männedorf, Switzerland).

Cytochrome c release detection

Mitochondria (30 μg protein) isolated from liver, brain, and heart were incubated in swelling buffer with 20 μg/ml Alamethicin (Ala, positive control, 100% baseline for ELISA), or Tat peptides for 30 min at 30°C. After a 7-min centrifugation at 10 000 g (4°C), proteins contained in supernatant were analyzed for quantification of cytochrome c release using ELISA kit from MBL (Cliniscience, Montrouge, France), or subjected to immunoblot detection of cytochrome c (mouse mAb clone 7H8.2C12; PharMingen, BD Biosciences, Le Pont de Claix, France).

Polarographic studies

Polarographic studies were performed using a Clark oxygen electrode (Hansatech Ltd, Norfolk, UK) in a magnetically stirred 250-μl cell thermostated at 37°C as previously described.34 Experiments were carried out in an electrode medium consisting of 0.3 M mannitol, 5 mM MgCl2, 10 mM KCl, 10 mM phosphate buffer pH 7.4, and 1 mg/ml BSA. The relative respiratory activity of mitochondria treated by Tat was calculated as follows: respiratory activity=(O2 Tat−O2 Co.) × 100/02 Co., where O2 Tat and O2 Co. correspond to oxygen consumption of Tat-treated and control mitochondria, respectively.

Spectrophotometric assays

Respiratory chain enzyme activities were spectrophotometrically measured at 37°C in 1 ml of 10 mM phosphate buffer pH 6.5, added with 1 mg/ml BSA using a double wavelength spectrophotometer (550–540 nm) (Cary 50, Varian, Melbourne, Australia).34 COX (CIV) activity was assayed in the presence of 10 μM reduced cytochrome c and 2.5 mM lauryl maltoside. Malonate-sensitive succinate cytochrome c reductase (complex II+III), rotenone sensitive cytochrome c reductase (complex I+III) and antimycin-sensitive decylubiquinol-cytochrome c reductase (complex III) were measured under standard conditions as previously described.34

Electron microscopy

Isolated mitochondria were fixed with 2% glutaraldehyde in 0.1 M cacodylate buffer, pH 7.2, for 3 h at 4°C. After several washes with this buffer, specimens were post-fixed with 1% osmium tetroxide containing 1.5% potassium cyanoferrate, dehydrated in gradual ethanol (30–100%), and embedded in Epon. Thin sections (70 nm) were collected onto 200 mesh cupper grids, and counterstained with uranyl acetate and lead citrate before examination with a Philips CM12 transmission electron microscope (Philips Research, Eindhoven, The Netherlands) at 80 kV.

Statistical analysis

Data obtained on isolated mitochondria were analyzed using Student's t-test for all pairwise comparisons of mean responses among the different treatments or conditions tested. Results are presented as the mean±S.D. for replicate experiments. Differences were considered significant when P<0.05 (*).