Abstract
Ubiquitination affects various immune processes and E3 ubiquitin ligases (E3) play an important role in determining substrate specificity. We identified 11 human E3 ligase genes of potential importance in pathogenesis of autoimmune diseases by search of public databases and screened them for candidacy of biological investigation with case–control linkage disequilibrium tests on multiple SNPs in the genes using rheumatoid arthritis (RA) as a model of autoimmune diseases. Significant association with RA was observed in an SNP in intron 3 of Cullin 1 (CUL1) that affected transcriptional efficiency of the promoter activity in lymphocytic cell lines. Quantitative expression analysis revealed that CUL1 mRNA was highly detected in lymphoid tissues including spleen and tonsil, and was specifically expressed in T and B lymphocytes in fractionated peripheral leukocytes. Histological evaluation of tonsils indicated that CUL1 protein expression was relatively specific for maturing germinal centers. Suppression of CUL1 expression had influence on the phenotype of T-cell line, that is, it inhibited IL-8 induction, which is known to play an important role in the migration of inflammatory cells into the affected area seen in RA. Our data suggest that the regulation of CUL1 expression in immunological tissues may affect the susceptibility of RA via altering lymphocyte signal transduction.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 6 digital issues and online access to articles
$119.00 per year
only $19.83 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
Pickart CM . Back to the future with ubiquitin. Cell 2004; 116: 181–190.
Hicke L, Dunn R . Regulation of membrane protein transport by ubiquitin and ubiquitin-binding proteins. Annu Rev Cell Dev Biol 2003; 19: 141–172.
Hershko A, Ciechanover A . The ubiquitin system. Annu Rev Biochem 1998; 67: 425–479.
Hatakeyama S, Nakayama KI . U-box proteins as a new family of ubiquitin ligases. Biochem Biophys Res Commun 2003; 302: 635–645.
Marchese A, Raiborg C, Santini F, Keen JH, Stenmark H, Benovic JL . The E3 ubiquitin ligase AIP4 mediates ubiquitination and sorting of the G protein-coupled receptor CXCR4. Dev Cell 2003; 5: 709–722.
Kumar KG, Tang W, Ravindranath AK, Clark WA, Croze E, Fuchs SY . SCF(HOS) ubiquitin ligase mediates the ligand-induced down-regulation of the interferon-alpha receptor. EMBO J 2003; 22: 5480–5490.
Soubeyran P, Kowanetz K, Szymkiewicz I, Langdon WY, Dikic I . Cbl–CIN85–endophilin complex mediates ligand-induced downregulation of EGF receptors. Nature 2002; 416: 183–187.
Miyazaki K, Ozaki T, Kato C et al. A novel HECT-type E3 ubiquitin ligase, NEDL2, stabilizes p73 and enhances its transcriptional activity. Biochem Biophys Res Commun 2003; 308: 106–113.
Takano Y, Adachi S, Okuno M et al. The RING finger protein, RNF8, interacts with retinoid X receptor {alpha} and enhances Its transcription-stimulating activity. J Biol Chem 2004; 279: 18926–18934.
Heissmeyer V, Krappmann D, Hatada EN, Scheidereit C . Shared pathways of I{kappa}B kinase-induced SCF{beta}TrCP-mediated ubiquitination and degradation for the NF-{kappa}B precursor p105 and I{kappa}B{alpha}. Mol Cell Biol 2001; 21: 1024–1035.
Amir RE, Iwai K, Ciechanover A . The NEDD8 pathway is essential for SCFbeta-TrCP-mediated ubiquitination and processing of the NF-kappa B precursor p105. J Biol Chem 2002; 277: 23253–23259.
Pickart CM . Mechanisms underlying ubiquitination. Annu Rev Biochem 2001; 70: 503–533.
Kloetzel PM, Ossendorp F . Proteasome and peptidase function in MHC-class-I-mediated antigen presentation. Curr Opin Immunol 2004; 16: 76–81.
Kloetzel PM . Generation of major histocompatibility complex class I antigens: functional interplay between proteasomes and TPPII. Nat Immunol 2004; 5: 661–669.
Deng L, Wang C, Spencer E et al. Activation of the IkappaB kinase complex by TRAF6 requires a dimeric ubiquitin-conjugating enzyme complex and a unique polyubiquitin chain. Cell 2000; 103: 351–361.
Wang C, Deng L, Hong M, Akkaraju GR, Inoue J, Chen ZJ . TAK1 is a ubiquitin-dependent kinase of MKK and IKK. Nature 2001; 412: 346–351.
Nakayama K, Hatakeyama S, Maruyama S et al. Impaired degradation of inhibitory subunit of NF-{kappa}B (I{kappa}B) and {beta}-catenin as a result of targeted disruption of the {beta}-TrCP1 gene. Proc Natl Acad Sci USA 2003; 100: 8752–8757.
Fuchs SY, Chen A, Xiong Y, Pan ZQ, Ronai Z . HOS, a human homolog of Slimb, forms an SCF complex with Skp1 and Cullin1 and targets the phosphorylation-dependent degradation of IkappaB and beta-catenin. Oncogene 1999; 18: 2039–2046.
Cohen S, Achbert-Weiner H, Ciechanover A . Dual effects of I{kappa}B kinase {beta}-mediated phosphorylation on p105 fate: SCF{beta}-TrCP-dependent degradation and SCF{beta}-TrCP-independent processing. Mol Cell Biol 2004; 24: 475–486.
Wertz IE, O'Rourke KM, Zhou H et al. De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-[kappa]B signalling. Nature 2004; 430: 694–699.
Anandasabapathy N, Ford GS, Bloom D et al. GRAIL: an E3 ubiquitin ligase that inhibits cytokine gene transcription is expressed in anergic CD4+ T cells. Immunity 2003; 18: 535–547.
Seroogy CM, Soares L, Ranheim EA et al. The gene related to anergy in lymphocytes, an E3 ubiquitin ligase, is necessary for anergy induction in CD4T cells. J Immunol 2004; 173: 79–85.
Fang D, Elly C, Gao B et al. Dysregulation of T lymphocyte function in itchy mice: a role for Itch in TH2 differentiation. Nat Immunol 2002; 3: 281–287.
Naramura M, Jang IK, Kole H, Huang F, Haines D, Gu H . c-Cbl and Cbl-b regulate T cell responsiveness by promoting ligand-induced TCR down-modulation. Nat Immunol 2002; 3: 1192–1199.
Sohn HW, Gu H, Pierce SK . Cbl-b negatively regulates B cell antigen receptor signaling in mature B cells through ubiquitination of the tyrosine kinase Syk. J Exp Med 2003; 197: 1511–1524.
Amano T, Yamasaki S, Yagishita N et al. Synoviolin/Hrd1, an E3 ubiquitin ligase, as a novel pathogenic factor for anthropathy. Genes Dev 2003; 17: 2436–2449.
Suzuki A, Yamada R, Chang X et al. Functional haplotypes of PADI4, encoding citrullinating enzyme peptidylarginine deiminase 4, are associated with rheumatoid arthritis. Nat Genet 2003; 34: 395–402.
Tokuhiro S, Yamada R, Chang X et al. An intronic SNP in a RUNX1 binding site of SLC22A4, encoding an organic cation transporter, is associated with rheumatoid arthritis. Nat Genet 2003; 35: 341–348.
Begovich AB, Carlton VE, Honigberg LA et al. A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis. Am J Hum Genet 2004; 75: 330–337.
Kipreos ET, Lander LE, Wing JP, He WW, Hedgecock EM . cul-1 is required for cell cycle exit in C. elegans and identifies a novel gene family. Cell 1996; 85: 829–839.
Dealy MJ, Nguyen KV, Lo J et al. Loss of Cul1 results in early embryonic lethality and dysregulation of cyclin E. Nat Genet 1999; 23: 245–248.
Wu K, Fuchs SY, Chen A et al. The SCFHOS/beta-TRCP-ROC1 E3 ubiquitin ligase utilizes two distinct domains within CUL1 for substrate targeting and ubiquitin ligation. Mol Cell Biol 2000; 20: 1382–1393.
Pan ZQ, Kentsis A, Dias DC, Yamoah K, Wu K . Nedd8 on cullin: building an expressway to protein destruction. Oncogene 2004; 23: 1985–1997.
Nakayama K, Nagahama H, Minamishima YA et al. Targeted disruption of Skp2 results in accumulation of cyclin E and p27(Kip1), polyploidy and centrosome overduplication. EMBO J 2000; 19: 2069–2081.
Haga H, Yamada R, Ohnishi Y, Nakamura Y, Tanaka T . Gene-based SNP discovery as part of the Japanese Millennium Genome Project: identification of 190 562 genetic variations in the human genome. Single-nucleotide polymorphism. J Hum Genet 2002; 47: 605–610.
Piva R, Liu J, Chiarle R, Podda A, Pagano M, Inghirami G . In vivo interference with Skp1 function leads to genetic instability and neoplastic transformation. Mol Cell Biol 2002; 22: 8375–8387.
Wojcik EJ, Glover DM, Hays TS . The SCF ubiquitin ligase protein slimb regulates centrosome duplication in Drosophila. Curr Biol 2000; 10: 1131–1134.
Guzman-Rojas L, Sims-Mourtada JC, Rangel R, Martinez-Valdez H . Life and death within germinal centres: a double-edged sword. Immunology 2002; 107: 167–175.
Weyand CM, Goronzy JJ . Ectopic germinal center formation in rheumatoid synovitis. Ann NY Acad Sci 2003; 987: 140–149.
Ozaki K, Inoue K, Sato H et al. Functional variation in LGALS2 confers risk of myocardial infarction and regulates lymphotoxin-[alpha] secretion in vitro. Nature 2004; 429: 72–75.
Ozaki K, Ohnishi Y, Iida A et al. Functional SNPs in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction. Nat Genet 2002; 32: 650–654.
Nakamura K, Kennedy MA, Baldan A, Bojanic DD, Lyons K, Edwards PA . Expression and regulation of multiple murine ATP-binding cassette transporter G1 mRNAs/isoforms that stimulate cellular cholesterol efflux to high density lipoprotein. J Biol Chem 2004; 279: 45980–45989.
Heinemeyer T, Wingender E, Reuter I et al. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res 1998; 26: 362–367.
Bories JC, Willerford DM, Grevin D et al. Increased T-cell apoptosis and terminal B-cell differentiation induced by inactivation of the Ets-1 proto-oncogene. Nature 1995; 377: 635–638.
Muthusamy N, Barton K, Leiden JM . Defective activation and survival of T cells lacking the Ets-1 transcription factor. Nature 1995; 377: 639–642.
Mukaida N, Mahe Y, Matsushima K . Cooperative interaction of nuclear factor-kappa B- and cis-regulatory enhancer binding protein-like factor binding elements in activating the interleukin-8 gene by pro-inflammatory cytokines. J Biol Chem 1990; 265: 21128–21133.
Hwang SY, Kim JY, Kim KW et al. IL-17 induces production of IL-6 and IL-8 in rheumatoid arthritis synovial fibroblasts via NF-kappaB- and PI3-kinase/Akt-dependent pathways. Arthritis Res Ther 2004; 6: R120–R128.
Ohnishi Y, Tanaka T, Ozaki K, Yamada R, Suzuki H, Nakamura Y . A high-throughput SNP typing system for genome-wide association studies. J Hum Genet 2001; 46: 471–477.
Miyazawa K, Mori A, Yamamoto K, Okudaira H . Transcriptional roles of CCAAT/enhancer binding protein-beta, nuclear factor-kappaB, and C-promoter binding factor 1 in interleukin (IL)-1beta-induced IL-6 synthesis by human rheumatoid fibroblast-like synoviocytes. J Biol Chem 1998; 273: 7620–7627.
Acknowledgements
We thank members of the Laboratory for Rheumatic Diseases for their technical assistance; H Kawakami and T Kawaguchi for their computer programming; S Yoshino for clinical samples; K Watanabe and T Hirai for assistance in search of various kinds of databases; M Ono, T Takahashi, T Ohtsuka and M Nakayama for discussions. This work was supported by a grant from the Japanese Millenium Project.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Kawaida, R., Yamada, R., Kobayashi, K. et al. CUL1, a component of E3 ubiquitin ligase, alters lymphocyte signal transduction with possible effect on rheumatoid arthritis. Genes Immun 6, 194–202 (2005). https://doi.org/10.1038/sj.gene.6364177
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/sj.gene.6364177
Keywords
This article is cited by
-
Predictive genetic biomarkers for the efficacy of methotrexate in rheumatoid arthritis: a systematic review
The Pharmacogenomics Journal (2020)
-
GWAS Analysis Indicated Importance of NF-κB Signaling Pathway in Host Resistance Against Motile Aeromonas Septicemia Disease in Catfish
Marine Biotechnology (2019)
-
Aberrant Expression Pattern and Location of Cullin 1 are Associated With the Development of Papillary Carcinoma in Thyroid and Cyclin D1 Expression
Endocrine Pathology (2014)