Skip to main content

Thank you for visiting You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

US beef tests cook up a storm

Critics question benefits of broader E. coli screening.

The bacterium Escherichia coli O157:H7 can cause serious cases of food poisoning. Credit: K. LOUNATMAA/SPL

Every week, dozens of kilograms of raw beef from meat-processing plants across the United States are rushed to one of three federal laboratories to be picked apart, pulverized, incubated and analysed. Working for the US Department of Agriculture (USDA), technicians in these labs are searching for Escherichia coli O157:H7, a toxic variety of the bacterium that has been monitored in US beef since 1994. But beginning on 4 June, the search will expand to include six more E. colisubtypes or ‘serogroups’.

US agriculture secretary Tom Vilsack announced the change last September, saying it would “stop problems before they start”. The USDA portrays the measure as a way to reduce risk, but it has not quantified the number of people that would be spared illness by the change. With the new screening protocol now imminent, meat producers are questioning the rationale behind the move and at least one outspoken expert agrees.

“I think it’s a fundamentally flawed policy, and it’s not based on the best science,” says Michael Doyle, a microbiologist and director of the Center for Food Safety at the University of Georgia in Griffin. He says that the USDA risks wasting limited resources chasing bacteria whose effects on human health are still unclear.

Most types of E. coli are harmless or even beneficial, such as those that colonize the healthy human gut. But some, such as O157:H7, can produce Shiga toxin, which can be harmful. The USDA began screening raw beef for this microbe after it was linked to the deaths of four children who ate contaminated hamburgers in 1993. Readily identifiable through rapid screening, O157:H7 can sometimes trigger haemolytic uraemic syndrome, which can cause life-threatening kidney damage.

Over the past decade, improved diagnostic tests have linked a growing number of food-borne illnesses to other Shiga-toxin-producing E. coli (STEC) serogroups, including the latest additions to the USDA’s testing regimen, dubbed the Big Six (see ‘Emerging threat’). Last year, an STEC subtype traced to contaminated fenugreek sprouts made thousands of people across Europe ill, and killed at least 53 (see page 559).

Credit: Source: CDC FoodNet

The Centers for Disease Control and Prevention (CDC) in Atlanta, Georgia, estimates that 173,000 STEC infections occur annually across the United States, with O157:H7 responsible for roughly 36% and the Big Six accounting for most of the remainder. By targeting these, the USDA is bringing food regulation in line with public-health data, says Robert Tauxe, deputy director of the division of food-borne, waterborne and environmental diseases at the CDC. “We think this is an important step forward in preventing human disease,” he says.

Industry representatives counter that the expanded testing will be redundant, because existing O157:H7 testing is an indicator of overall cleanliness and food safety. “We have done extensive research over the past several years that shows that the preventative controls in our facilities today work equally well for the non-O157:H7 as they do for O157,” says James Hodges, executive vice-president of the American Meat Institute (AMI), a trade association in Washington DC.

The AMI estimates that the new tests will cost the industry between US$172 million and $324 million a year, because it contends the extra sample analysis will force processors to hold onto meat longer before distributing it. More tests will also mean more false positives that require investigation, says Doyle, delaying release of the meat and lowering its market value.

The USDA acknowledges that most infections linked to the Big Six do not stem from contaminated beef but from other sources, such as vegetables. The tests will not eliminate risk of E. coli infection, says David Goldman, assistant administrator for the Office of Public Health Science at the USDA’s Food Safety and Inspection Service. Nonetheless, he says, “we expect that this is a truly preventative measure”.

The pay-offs of such a precaution are far from certain. Although the Big Six are increasingly seen as sources of illness, their toxic effects are often less severe than those of O157:H7. The serogroups are also divided into strains, not all of which produce toxins. Shiga toxins themselves occur in types that vary in toxicity by up to a factor of 1,000. Scientists are still trying to determine which strains are likely to produce the most harmful Shiga toxins, and to identify auxiliary molecules that predict a given STEC’s virulence in humans.

“We’re learning more and more, but it’s very complex,” says Phillip Tarr, a microbiologist at Washington University in St Louis, Missouri. Tauxe concedes that more research is needed to better understand STEC pathology. “This is an area that we expect to evolve,” he says. But if the meat-packing industry challenges the rule in court, as it has done for some previous USDA measures, the science of E. coli toxicity could soon find itself again under the microscope — this time, a legal one.


Related links

Related links

Related links in Nature Research

Rules tighten on use of antibiotics on farms 2012-Jan-10

Phage on the rampage 2011-Jun-09

Microbe outbreak panics Europe 2011-Jun-07

German E. coli outbreak caused by previously unknown strain 2011-Jun-02

Blogpost: California BSE prion comes with a different twist

Related external links

European Food Safety Authority

Centers for Disease Control and Prevention

USDA Food Safety and Inspection Service

Michael Doyle

American Meat Institute

Rights and permissions

Reprints and Permissions

About this article

Cite this article

Shen, H. US beef tests cook up a storm. Nature 485, 558–559 (2012).

Download citation

  • Published:

  • Issue Date:

  • DOI:


Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing