Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Natural engineering principles of electron tunnelling in biological oxidation–reduction

Abstract

We have surveyed proteins with known atomic structure whose function involves electron transfer; in these, electrons can travel up to 14 Å between redox centres through the protein medium. Transfer over longer distances always involves a chain of cofactors. This redox centre proximity alone is sufficient to allow tunnelling of electrons at rates far faster than the substrate redox reactions it supports. Consequently, there has been no necessity for proteins to evolve optimized routes between redox centres. Instead, simple geometry enables rapid tunnelling to high-energy intermediate states. This greatly simplifies any analysis of redox protein mechanisms and challenges the need to postulate mechanisms of superexchange through redox centres or the maintenance of charge neutrality when investigating electron-transfer reactions. Such tunnelling also allows sequential electron transfer in catalytic sites to surmount radical transition states without involving the movement of hydride ions, as is generally assumed. The 14 Å or less spacing of redox centres provides highly robust engineering for electron transfer, and may reflect selection against designs that have proved more vulnerable to mutations during the course of evolution.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Electron-transfer rates and statistics for natural multiredox centre oxidoreductase structures in the PDB as of February 1999.
Figure 2: Chains of redox centres are used to cover large distances in natural proteins; chains often include conspicuously exergonic and endergonic electron-transfer steps.
Figure 3: The proximity between redox centres in clusters allows rapid tunnelling access to considerably endergonic radical intermediate states.

Similar content being viewed by others

References

  1. Michaelis,L. in The Enzymes, Chemistry and Mechanism of Action (eds Sumner, J. B. & Myrback, K.) 1–54 (Academic, New York, 1951).

    Google Scholar 

  2. Devault,D. Quantum mechanical tunnelling in biological systems. Quart. Rev. Biophys. 13, 387–564 (1980).

    Article  CAS  Google Scholar 

  3. Marcus,R. A. & Sutin,N. Electron transfers in chemistry and biology. Biochim. Biophys. Acta 811, 265–322 (1985).

    Article  CAS  Google Scholar 

  4. Jortner,J. Temperature dependent activation energy for electron transfer between biological molecules. J. Chem. Phys. 64, 4860–4867 (1976).

    Article  ADS  CAS  Google Scholar 

  5. Hopfield,J. J. Electron transfer between biological molecules by thermally activated tunneling. Proc. Natl Acad. Sci. USA 71, 3640–3644 (1974).

    Article  ADS  CAS  Google Scholar 

  6. Moser,C. C., Keske,J. M., Warncke,K., Farid,R. S. & Dutton,P. L. Nature of biological electron-transfer. Nature 355, 796–802 (1992).

    Article  ADS  CAS  Google Scholar 

  7. Smalley,J. F. et al. The kinetics of electron-transfer through ferrocene-terminated alkanethiol monolayers on gold. J. Phys. Chem. 99, 13141–13149 (1995).

    Article  CAS  Google Scholar 

  8. Beratan,D. N., Onuchic,J. N., Winkler,J. R. & Gray,H. B. Electron-tunneling pathways in proteins. Science 258, 1740–1741 (1992).

    Article  ADS  CAS  Google Scholar 

  9. Moser,C. C. & Dutton,P. L. Engineering protein structure for electron transfer function in photosynthetic reaction centers. Biochim. Biophys. Acta 1101, 171–176 (1992).

    Article  CAS  Google Scholar 

  10. Gunner,M. R. & Dutton,P. L. Temperature and ΔG° dependence of the electron-transfer from BPh- to QA in reaction center protein from Rhodobacter sphaeroides with different quinones as QA. J. Am. Chem. Soc. 111, 3400–3412 (1989).

    Article  CAS  Google Scholar 

  11. Venturoli,G. et al. Effects of temperature and ΔG° on electron transfer from cytochrome c2 to the photosynthetic reaction center of the purple bacterium Rhodobacter sphaeroides. Biophys. J. 74, 3226–3240 (1998).

    Article  ADS  CAS  Google Scholar 

  12. Kuki,A. & Wolynes,P. G. Electron tunneling paths in proteins. Science 236, 1647–1652 (1987).

    Article  ADS  CAS  Google Scholar 

  13. Kisker,C. et al. Molecular basis of sulfite oxidase deficiency from the structure of sulfite oxidase. Cell 91, 973–983 (1997).

    Article  CAS  Google Scholar 

  14. Coelho,A. V. et al. Desulfoferrodoxin structure determined by MAD phasing and refinement to 1.9-angstrom resolution reveals a unique combination of a tetrahedral FeS4 centre with a square pyramidal FeSN4 centre. J. Biol. Inorg. Chem. 2, 680–689 (1997).

    Article  CAS  Google Scholar 

  15. Dutton,P. L. et al. in Biological Electron Transfer Chains: Genetics, Composition and Mode of Operation 3–8 (Kluwer Academic, Netherlands, 1998).

    Book  Google Scholar 

  16. Gunner,M. R., Tiede,D. M., Prince,R. C. & Dutton,P. in Function of Quinones in Energy Conserving Systems (ed. Trumpower, B. L.) 265–269 (Academic, New York, 1982).

  17. Woodbury,N. W., Parson,W. W., Gunner,M. R., Prince,R. C. & Dutton,P. L. Radical-pair energetics and decay mechanisms in reaction centers containing anthraquinones, napthoquinones or benzoquinones in place of ubiquinone. Biochim. Biophys. Acta 851, 6–22 (1986).

    Article  CAS  Google Scholar 

  18. Volbeda,A. et al. Crystal-structure of the nickel-iron hydrogenase from Desulfovibrio gigas. Nature 373, 580–587 (1995).

    Article  ADS  CAS  Google Scholar 

  19. Rousset,M. et al. [3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis. Proc. Natl Acad. Sci. USA 95, 11625–11630 (1998).

    Article  ADS  CAS  Google Scholar 

  20. Michel,H., Deisenhofer,J. & Epp,O. Pigment protein interactions in the photosynthetic reaction center from Rhodopseudomonas viridis. EMBO J. 5, 2445–2451 (1986).

    Article  CAS  Google Scholar 

  21. Knaff,D. B. et al. Reaction of cytochrome c2 with photosynthetic reaction centers from Rhodopseudomonas viridis. Biochemistry 30, 1303–13010 (1991).

    Article  CAS  Google Scholar 

  22. Shopes,R. J., Holten,D., Levine,L. M. A. & Wraight,C. A. Kinetics of oxidation of the bound cytochromes in reaction centers from Rhodopseudomonas viridis. Photosynth. Res. 12, 165–180 (1987).

    Article  CAS  Google Scholar 

  23. Dohse,B. et al. Electron-transfer from the tetraheme cytochrome to the special pair in the Rhodopseudomonas viridis reaction-center—effect of mutations of tyrosine L162. Biochemistry 34, 11335–11343 (1995).

    Article  CAS  Google Scholar 

  24. Meyer,T. E., Bartsch,R. G., Cusanovich,M. A. & Tollin,G. Kinetics of photooxidation of soluble cytochromes, hipip, and azurin by the photosynthetic reaction center of the purple phototrophic bacterium Rhodopseudomonas viridis. Biochemistry 32, 4719–4726 (1993).

    Article  CAS  Google Scholar 

  25. Ortega,J. M., Drepper,F. & Mathis,P. Electron transfer between cytochrome c2 and the tetraheme cytochrome c in Rhodopseudomonas viridis. Photosyn. Res. 59, 147–157 (1999).

    Article  CAS  Google Scholar 

  26. Proshlyakov,D. A., Pressler,M. A. & Babcock,G. T. Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase. Proc. Natl Acad. Sci. USA 95, 8020–8025 (1998).

    Article  ADS  CAS  Google Scholar 

  27. Stubbe,J. & van der Donk,W. A. Protein radicals in enzyme catalysis. Chem. Rev. 98, 705–762 (1998).

    Article  CAS  Google Scholar 

  28. Hunt,J., Massey,V., Dunham,W. R. & Sands,R. H. Redox potentials of milk xanthine dehydrogenase—room-temperature measurement of the FAD and 2Fe/2S center potentials. J. Biol. Chem. 268, 18685–18691 (1993).

    CAS  PubMed  Google Scholar 

  29. Farrington,J. A., Land,E. J. & Swallow,A. J. The one-electron reduction potentials of NAD. Biochim. Biophys. Acta 590, 273–276 (1980).

    Article  CAS  Google Scholar 

  30. Romao,M. J. et al. Crystal-structure of the xanthine oxidase-related aldehyde oxidoreductase from D. gigas. Science 270, 1170–1176 (1995).

    Article  ADS  CAS  Google Scholar 

  31. Huber,R. et al. A structure-based catalytic mechanism for the xanthine oxidase family of molybdenum enzymes. Proc. Natl Acad. Sci. USA 93, 8846–8851 (1996).

    Article  ADS  CAS  Google Scholar 

  32. Powell,M. F., Wu,J. C. & Bruice,T. C. Ferricyanide oxidation of dihydropyridines and analogues. J. Am. Chem. Soc. 106, 3850–3856 (1984).

    Article  CAS  Google Scholar 

  33. Eberson,L. Electron Transfer Reactions in Organic Chemistry 1–234 (Springer, New York, 1987).

    Google Scholar 

  34. Pross,A. The single electron shift as a fundamental process in organic chemistry: the relationship between polar and electron-transfer pathways. Acc. Chem. Res. 18, 212–219 (1985).

    Article  CAS  Google Scholar 

  35. Gray,H. B. & Winkler,J. R. Electron transfer in proteins. Annu. Rev. Biochem. 65, 537–561 (1996).

    Article  CAS  Google Scholar 

  36. McLendon,G. Control of biological electron-transport via molecular recognition and binding—the velcro model. Struct. Bond. 75, 159–174 (1991).

    Article  CAS  Google Scholar 

  37. Darwin,C. Origin of Species by Means of Natural Selection (Earlton House, New York, 1872).

    Google Scholar 

  38. Jortner,J., Bixon,M., Langenbacher,T. & Michel-Beyerle,M. E. Charge transfer and transport in DNA. Proc. Natl Acad. Sci. USA 95, 12759–12765 (1998).

    Article  ADS  CAS  Google Scholar 

  39. Siegbahn,P. E. M., Blomberg,M. R. A. & Crabtree,R. H. Hydrogen transfer in the presence of amino acid radicals. Theor. Chem. Acc. 97, 289–300 (1997).

    Article  CAS  Google Scholar 

  40. Ehrenberg,A. Protein dynamics, free radical transfer and reaction cycle of ribonucleotide reductase. Third International Symposium on Biological Physics 1, 1–10 (Springer, New York, 1998).

    Google Scholar 

  41. Mitchell,P. The protonmotive Q cycle: a general formulation. FEBS Lett. 59, 137–139 (1975).

    Article  CAS  Google Scholar 

  42. Spee,J. H. et al. Redox properties and electron paramagnetic resonance spectroscopy of the transition state complex of Azotobacter vinelandii nitrogenase. FEBS Lett. 432, 55–58 (1998).

    Article  CAS  Google Scholar 

  43. Siegbahn,P. E. M. Theoretical study of the substrate mechanism of ribonucleotide reductase. J. Am. Chem. Soc. 120, 8417–8439 (1998).

    Article  CAS  Google Scholar 

  44. Bahnson,B. J., Colby,T. D., Chin,J. K., Goldstein,B. M. & Klinman,J. P. A link between protein structure and enzyme catalyzed hydrogen tunneling. Proc. Natl Acad. Sci. USA 94, 12797–12802 (1997).

    Article  ADS  CAS  Google Scholar 

  45. Zinth,W., Arlt,T. & Wachtveitl,J. The primary processes of bacterial photosynthesis—ultrafast reactions for the optimum use of light energy. Ber. Bunsenges Phys. Chem. 100, 1962–1966 (1996).

    Article  CAS  Google Scholar 

  46. Allen,J. P. et al. Free energy dependence of the direct charge recombination from the primary and secondary quinones in reaction centers from Rhodobacter sphaeroides. Photosyn. Res. 55, 227–233 (1998).

    Article  CAS  Google Scholar 

  47. Li,J. L., Gilroy,D., Tiede,D. M. & Gunner,M. R. Kinetic phases in the electron transfer from P+QA-QB to P+QAQB- and the associated processes in Rhodobacter sphaeroides R-26 reaction centers. Biochemistry 37, 2818–2829 (1998).

    Article  CAS  Google Scholar 

  48. Sogabe,S. et al. Crystal-structure of cytochrome-c2 from Rhodopseudomonas viridis at 3.0 Å resolution. Photosyn. Res. 34, 154–154 (1992).

    Google Scholar 

  49. Alegria,G. & Dutton,P. L. Langmuir–Blodgett monolayer films of bacterial photosynthetic membranes and isolated reaction centers: preparation, spectrophotometric and electrochemical characterization. I. Biochim. Biophys. Acta 1057, 239–257 (1991).

    Article  CAS  Google Scholar 

  50. Teixeira,M. et al. Redox intermediates of Desulfovibrio gigas [NiFe] hydrogenase generated under hydrogen. Mossbauer and EPR characterization of the metal centers. J. Biol. Chem. 264, 16435–16450

Download references

Acknowledgements

This work was supported by grants from the NIH. We are grateful to C. A. Wraight, G. T. Babcock, W. Junge, R. J. P. Williams and H. B. Gray for timely encouragement and insight. Several crystallographers, most notably H. Michel, M. Frey, D. Rees, E. Berry and R. Huber, gave us crystal coordinates before publication.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P. Leslie Dutton.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Page, C., Moser, C., Chen, X. et al. Natural engineering principles of electron tunnelling in biological oxidation–reduction. Nature 402, 47–52 (1999). https://doi.org/10.1038/46972

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/46972

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing