Skip to main content

Thank you for visiting You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Trees spit out gas from soil microbes

Trunks act as giant methane chimneys.

Waterlogged soils provide the perfect environment for methane-producing soil bacteria. Credit: J. E. Roche/

The atmospheric concentration of methane, a greenhouse gas with 25 times the heating power of carbon dioxide, has more than doubled over the past 200 years. Researchers have long known that methane comes from anaerobic processes in waterlogged soils such as swamps, wetlands and rice fields, as well as in the guts of termites and ruminant animals such as cows and sheep. But in 2006, a team proposed the surprising idea1 that plants, too, produce methane — as much as 10–30% of the world's total methane emissions. If true, that would require a major overhaul of global carbon budgets.

Now a study suggests that trees can act like chimneys, moving methane gas produced by soil microbes up through roots, stems and leaves before releasing it into the atmosphere. This effect could account for as much as 10% of methane emissions globally2. It could also help to explain why methane fluxes are higher than expected in wet tropical regions.

Ellen Nisbet, an evolutionary biologist at the University of South Australia in Adelaide, previously reported that plants do not have the biochemical pathways needed to generate methane3. "I'm pretty sure from our studies that [plants] aren't making methane themselves," she says. "This paper is really showing that methane is moving around the plants, that it's being transported up and out."

The team responsible for the latest work, led by atmospheric scientist Andrew Rice of Portland State University in Oregon, measured methane flow in three tree species, which were flooded to create conditions ripe for anaerobic microbes to start churning out methane.

Rice says that the work does not rule out the possibility that plants themselves can produce methane aerobically; for instance, light at a certain intensity and wavelength could create a photolytic reaction that produces methane, as the 2006 work suggested. "The question is the magnitude of that source," says Rice.

The latest study also found that the isotopic composition of the microbial methane transported through the trees was almost identical to that of the methane emissions observed in the 2006 study. This means that it could be tough to distinguish in the field between methane produced anaerobically and that produced aerobically.

The idea of aerobic methane production "is still a hard pill for a lot of scientists to swallow", says Patrick Megonigal, a biogeochemist at the Smithsonian Environmental Research Center in Washington DC. "This paper shows that there are other mechanisms that we understand a little better, which could give you the same isotopic ratio and fit into the budget nicely."

The team leader of the original paper says he remains confident that plants are making their own methane, although soils clearly also contribute. "It's getting clearer that living vegetation is maybe playing a more active role in emitting methane to the atmosphere than we previously thought," says Frank Keppler, a geochemist at the Max Planck Institute for Chemistry in Mainz, Germany.


  1. Keppler, F., Hamilton, J. T. G., Braß, M. & Röckmann, T. Nature 439, 187-191 (2006).

    ADS  CAS  Article  Google Scholar 

  2. Rice, A. L. et al. Geophys. Res. Lett. doi:10.1029/2009GL041565 (2010).

  3. Nisbet, R. E. R. et al. Proc. R. Soc. B 276, 1347-1354 (2009).

    CAS  Article  Google Scholar 

Download references


Related links

Related links

Related links in Nature Research

Nature Reports Climate Change

Rights and permissions

Reprints and Permissions

About this article

Cite this article

Mascarelli, A. Trees spit out gas from soil microbes. Nature 463, 861 (2010).

Download citation

  • Published:

  • Issue Date:

  • DOI:


Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing