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Solution structure of the POU-specific DNA-binding domain of Oct-1

Nature volume 362, pages 852–855 (1993)Cite this article

Abstract

THE transcription factor Oct-1 belongs to a family containing a POU DNA-binding domain. This bipartite domain is composed of a POU-specific domain (POUs) and a POU-homeodomain (POUhd) connected by a flexible linker. The left half of the optimal POU binding site, the octamer ATGCAAAT, is recognized by POUs and the right half by POUhd. We have determined the solution structure of POUs by nuclear magnetic resonance. It consists of four α-helices connected by short loops. Helices I and IV are in a parallel coiled-coil arrangement. The folding topology appears to be similar to that of the bacteriophage Λ-represser and 434 represser. For the well defined parts of the protein (residues 1–71), the average root-mean square deviation for the backbone atoms is 0.9 Å. Based on the observed selective exchange broadening in the (15N, 1H)-HMQC (heteronuclear multiple quantum coherence) spectrum of the POUs–DNA complex we conclude that DNA-binding is mediated by helix III. We propose a model for the POU–DNA complex in which both recognition helices from the two subdomains have adjacent positions in the major groove.

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Authors and Affiliations

  1. Bijvoet Center for Biomoiecular Research, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands

    Niek Dekker, Michel Cox, Rolf Boelens & Robert Kaptein

  2. Laboratory for Physiological Chemistry, Utrecht University, Vondellaan 24a, 3521 GG, Utrecht, The Netherlands

    Niek Dekker, C. Peter Verrijzer & Peter C. van der Vliet

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  1. Niek Dekker
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Dekker, N., Cox, M., Boelens, R. et al. Solution structure of the POU-specific DNA-binding domain of Oct-1. Nature 362, 852–855 (1993). https://doi.org/10.1038/362852a0

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