Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Research Article
  • Published:

Degenerated pIX-IVa2 adenoviral vector sequences lowers reacquisition of the E1 genes during virus amplification in 293 cells

Abstract

A critical issue for E1-deleted adenoviral vectors manufactured from 293 cells is the emergence of replication-competent adenovirus (RCA). These contaminants arise through homologous recombination between identical sequences framing the E1 locus displayed by 293 cells, and the vector backbones. Modified recombinogenic sequences (syngen) were thus introduced within the vector backbone, and virus viability and RCA emergence were assessed. Syngen#1 is a synthetic sequence displaying silent point mutations in the pIX and IVa2 coding regions. A side by side comparison of Ad5CMV/p53 (E1-deleted adenovirus expressing the p53 tumor suppressor gene) and AVΔE1#1CMV/p53 (with syngen#1 in place of wild-type sequences) demonstrated a normal productivity for the modified construct. The altered sequences did not impair p53-mediated apoptosis in a model tumor cell line. Most importantly, a statistically significant decrease in terms of RCA occurrence could also be demonstrated. Degenerescence of the recombinogenic sequences could be further accentuated by modifying non-coding pIX region (syngen #2), with no effect on virus productivity and stability. We concluded that these vector modifications constitute a feasible strategy to reduce RCA emergence during amplification in 293 cells. This approach could also be applied to decrease reincorporation of the E1 genes during amplification of ΔE1ΔE4 vectors in 293/E4-transcomplementing cells.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1
Figure 2
Figure 3
Figure 4

Similar content being viewed by others

References

  1. Stratford-Perricaudet LD, Perricaudet M . Gene transfer into animals: the promise of adenovirus Cohen-Adenauer O, Boiron M (eds); Human Gene Transfer John Libbey Eurotext 1991 51–61

  2. Graham FL, Smiley J, Russel WC, Nairn R . Characteristics of a human cell line transformed by DNA from human adenovirus type 5 J Gen Virol 1977 36: 59–72

    Article  CAS  PubMed  Google Scholar 

  3. Louis N, Evelegh C, Graham FL . Cloning and sequencing of the cellular-viral junctions from the human adenovirus type 5 transformed 293 cell line Virology 1997 233: 423–429

    Article  CAS  PubMed  Google Scholar 

  4. Lochmüller H et al. Emergence of early region 1-containing replication-competent adenovirus in stocks of replication-defective adenovirus recombinant (ΔE1+ΔE3) during multiple passages in 293 cells Hum Gene Ther 1994 5: 1485–1491

    Article  PubMed  Google Scholar 

  5. Hehir KM et al. Molecular characterization of replication-competent variants of adenovirus vectors and genome modifications to prevent their occurence J Virol 1996 70: 8459–8467

    CAS  PubMed  PubMed Central  Google Scholar 

  6. Zhu J et al. Characterization of replication-competent adenovirus isolates from large-scale production of a recombinant adenoviral vector Hum Gene Ther 1999 10: 113–121

    Article  CAS  PubMed  Google Scholar 

  7. Hermens WT, Verhaagen J . Adenoviral vector-mediated gene expression in the nervous system of immunocompetent Wistar and T cell-deficient nude rats Hum Gene Ther 1997 8: 1049–1063

    Article  CAS  PubMed  Google Scholar 

  8. Murphy DB . Guidance for Human somatic cell therapy and gene therapy Hum Gene Ther 1998 9: 1513–1524

    Article  Google Scholar 

  9. Fallaux FJ et al. New helper cells and matched early region 1-deleted adenovirus vectors prevent generation of repication-competent adenoviruses Hum Gene Ther 1998 9: 1909–1917

    Article  CAS  PubMed  Google Scholar 

  10. Dedieu JF et al. Long term gene delivery into livers of immunocompetent mice with E1/E4-defective adenoviruses J Virol 1997 71: 4626–4637

    CAS  PubMed  PubMed Central  Google Scholar 

  11. Holliday R . A mechanism for gene conversion in fungi Genet. Res 1964 5: 282–304

    Article  Google Scholar 

  12. Medelson MS, Radding CM . A general model for genetic recombination. Proc Natl Acad Sci USA 1975 72: 358–361

    Article  Google Scholar 

  13. Szostack JW, Orr-Weaver TL, Rothstein RJ, Stahl FW . The double-strand-break repair model for recombination Cell 1983 33: 25–35

    Article  Google Scholar 

  14. Rubnitz J, Subramani S . The minimum amount of homology required for homologous recombination in mammalian cells Mol Cell Biol 1884 4: 2253–2258

    Article  Google Scholar 

  15. Waldman AS, Liskay RM . Differential effects of base-pair mismatch on intrachromosomal versus extrachromosomal recombination in mouse cells Proc Natl Acad Sci USA 1987 84: 5340–5344

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. TeRiele H, Maandag ER, Berns A . Highly efficient gene targeting in embrionic stem cells through homologous recombination with isogenic DNA constructs Proc Natl Acad Sci USA 1992 89: 5128–5132

    Article  CAS  Google Scholar 

  17. Crouzet J et al. Recombinational construction in Escherichia coli of infectious adenoviral genome Proc Natl Acad Sci USA 1997 94: 1414–1419

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Lutz P et al. The product of the adenovirus intermediate gene IX is a transcriptional activator J Virol 1997 71: 5102–5109

    CAS  PubMed  PubMed Central  Google Scholar 

  19. Dijkema R et al. Gene organization of the transforming region of the adenovirus type 7 Gene 1982 18: 143–156

    Article  CAS  PubMed  Google Scholar 

  20. Liskay RM, Letsou A, Stachelek JL . Homology requirement for efficient gene conversion between duplicated chromosomal sequences in mammalian cells Genetics 1987 115: 161–167

    CAS  PubMed  PubMed Central  Google Scholar 

  21. Ayares D, Chekuri L, Song K-Y, Kucherlapati R . Sequence homology requirements for intermolecular recombination in mammalian cells Proc Natl Acad Sci USA 1986 83: 5199–5203

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Yeh P et al. Efficient dual transcomplementation of adenovirus E1 and E4 regions from a 293-derived cell line expressing a minimal E4 functional unit J Virol 1996 70: 559–565

    CAS  PubMed  PubMed Central  Google Scholar 

  23. Marsh JL, Erfle M, Wykes EJ . The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation Gene 1984 32: 481–485

    Article  CAS  PubMed  Google Scholar 

  24. Chroboczek J, Bieder F, Jacrot B . The sequence of the genome of the adenovirus type 5 and its comparison with the genome of the adenovirus type 2 Virology 1992 186: 280–285

    Article  CAS  PubMed  Google Scholar 

  25. Zhang WW et al. High efficiency gene transfer and high level expression of wild type p53 in human lung cancer cells mediated by recombinant adenovirus Cancer Gene Ther 1994 1: 5–13

    PubMed  Google Scholar 

  26. Weinberg DH, Ketner G . A cell line that supports the growth of a defective early region 4 deletion mutant in human adenovirus type 2 Proc Natl Acad Sci USA 1983 80: 5383–5386

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Robert JJ, Geoffroy MC, Finiels F, Mallet J . An adenoviral vector-based system to study neuronal gene expression: Analysis of the rat tyrosine hydroxylase promoter in cultured neurons J Neurochem 1997 68: 2152–2160

    Article  CAS  PubMed  Google Scholar 

  28. Cramér H . Mathematical Methods of Statistics Princeton University Press 1946

    Google Scholar 

Download references

Acknowledgements

The authors thank Claude Kedinger for anti-pIX and anti-IVa2 antibodies, F Bellot for anti-virion L5 antibodies and T Huet for pIN116 plasmid.

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Robert, JJ., Gauffeny, I., Maccario, J. et al. Degenerated pIX-IVa2 adenoviral vector sequences lowers reacquisition of the E1 genes during virus amplification in 293 cells. Gene Ther 8, 1713–1720 (2001). https://doi.org/10.1038/sj.gt.3301562

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/sj.gt.3301562

Keywords

This article is cited by

Search

Quick links