Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Specific protein-nucleic acid recognition in ribonuclease T1–2′-guanylic acid complex: an X-ray study

Abstract

RNase T1 is folded into an α-helix of 4.5 turns, covered by a four-strand antiparallel β-sheet. Specific recognition of 2′-guanylic acid arises from hydrogen bonding between main chain peptide groups and the O-6 and N-1–H of guanine, as well as from stacking of Tyr 45 on guanine. At the active site, Glu 58, His 92 and Arg 77 are involved in phosphodiester hydrolysis.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Kartha, G. et al. Nature 213, 862–865 (1967).

    Article  ADS  CAS  Google Scholar 

  2. Carlisle, C. H. et al. J. molec. biol. 85, 1–18 (1974).

    Article  CAS  Google Scholar 

  3. Wlodawer, A. et al. J. biol. Chem. 257, 1325–1332 (1982).

    CAS  PubMed  Google Scholar 

  4. Wyckoff, H. W. et al. J. biol. Chem. 245, 305–328 (1970).

    CAS  PubMed  Google Scholar 

  5. Arnone, A. et al. J. biol. Chem. 246, 2302–2316 (1971).

    CAS  PubMed  Google Scholar 

  6. Egami, F. et al. Molec. Biol. Biochem. Biophys. 32, 250–277 (1980).

    Article  CAS  Google Scholar 

  7. Takahashi, K. et al. J. biol. Chem. 242, 4682–4690 (1967).

    CAS  PubMed  Google Scholar 

  8. Takahashi, K. J. Biochem., Tokyo 67, 833–839 (1970).

    Article  CAS  Google Scholar 

  9. Takahashi, K. J. Biochem., Tokyo 80, 1267–1275 (1976).

    Article  CAS  Google Scholar 

  10. Fülling, R. & Rüterjans, H. FEBS Lett. 88, 279–282 (1978).

    Article  Google Scholar 

  11. Arata, Y. et al. Biochemistry 18, 18–24 (1979).

    Article  CAS  Google Scholar 

  12. Osterman, H. L. & Walz, F. G. Jr Biochemistry 18, 1984–1988 (1979).

    Article  CAS  Google Scholar 

  13. Takahashi, K. J. Biochem., Tokyo 68, 659–664 (1970).

    Article  CAS  Google Scholar 

  14. Heinemann, U. et al. Eur. J. Biochem. 109, 109–114 (1980).

    Article  CAS  Google Scholar 

  15. Stout, G. H. & Jensen, L. H. X-Ray Structure Determination (Collier-Macmillan, London, 1968).

    Google Scholar 

  16. North, A. C. T. et al. Acta crystallogr. A 24, 351–359 (1968).

    Article  Google Scholar 

  17. Matthews, B. W. Acta crystallogr. 20, 230–239 (1966).

    Article  CAS  Google Scholar 

  18. Main, P. et al. MULTAN. A System of Computer Programs for the Automatic Solution of Crystal Structures from X-ray Diffraction Data (University of York, UK and University of Louvain, Belgium, 1977).

    Google Scholar 

  19. Blow, D. M. & Crick, F. H. C. Acta crystallogr. 12, 794–802 (1959).

    Article  CAS  Google Scholar 

  20. Richards, F. M. J. molec. Biol. 37, 225–230 (1968).

    Article  CAS  Google Scholar 

  21. Takahashi, K. J. Biochem., Tokyo 70, 945–960 (1971).

    Article  CAS  Google Scholar 

  22. Richardson, J. S. et al. Proc. natn. Acad. Sci. U.S.A. 75, 2574–2578 (1978).

    Article  ADS  CAS  Google Scholar 

  23. Irie, M. J. Biochem., Tokyo 63, 649–653 (1968).

    Article  CAS  Google Scholar 

  24. Osterman, H. L. & Walz, F. G. Jr Biochemistry 17, 4124–4130 (1978).

    Article  CAS  Google Scholar 

  25. Kanaya, S. & Uchida, T. J. Biochem., Tokyo 89, 591–597 (1981).

    Article  CAS  Google Scholar 

  26. Yamamoto, Y. et al. Nucleic Acids Res. Symp. Ser. 10, 227–231 (1981).

    CAS  Google Scholar 

  27. Hartley, R. W. J. molec. Evol. 15, 355–358 (1980).

    Article  ADS  CAS  Google Scholar 

  28. Takahashi, K. J. Biochem., Tokyo 72, 1469–1482 (1972).

    Article  CAS  Google Scholar 

  29. Oshima, T. & Imahori, K. J. Biochem., Tokyo 70, 197–199 (1971).

    Article  CAS  Google Scholar 

  30. Guschlbauer, W. & Courtois, Y. FEBS Lett. 1, 183–186 (1968).

    Article  CAS  Google Scholar 

  31. Son, T.-D. et al. J. Am. chem. Soc. 94, 7903–7911 (1972).

    Article  CAS  Google Scholar 

  32. Kyogoku, Y. et al. J. Biochem., Tokyo 91, 675–679 (1982).

    Article  CAS  Google Scholar 

  33. Pongs, O. Biochemistry 9, 2316–2321 (1970).

    Article  CAS  Google Scholar 

  34. Seeman, N. C. et al. Proc. natn. Acad. Sci. U.S.A. 73, 804–808 (1976).

    Article  ADS  CAS  Google Scholar 

  35. Helene, C. & Lancelot, G. Prog. Biophys. molec. Biol. 39, 1–68 (1982).

    Article  CAS  Google Scholar 

  36. Rüterjans, A. & Pongs, O. Eur. J. Biochem. 18, 313–318 (1971).

    Article  Google Scholar 

  37. Inagaki, F. et al. J. Biochem., Tokyo 89, 1185–1195 (1981).

    CAS  Google Scholar 

  38. Kimura, S. et al. J. Biochem., Tokyo 85, 301–310 (1979).

    Article  Google Scholar 

  39. Iida, S. & Ooi, T. Biochemistry 8, 3897–3901 (1969).

    Article  CAS  Google Scholar 

  40. Usher, D. A. Proc. natn. Acad. Sci. U.S.A. 62, 661–667 (1969).

    Article  ADS  CAS  Google Scholar 

  41. Eckstein, F. et al. Biochemistry 11, 3507–3512 (1972).

    Article  CAS  Google Scholar 

  42. Richards, F. M. & Wyckoff, H. W. The Enzymes Vol. 4 (ed. Boyer, P. D.) 647–806 (Academic, New York, 1971).

    Google Scholar 

  43. Wodak, S. Y. et al. J. molec. Biol. 116, 855–875 (1977).

    Article  CAS  Google Scholar 

  44. Cotton, F. A. et al. Proc. natn. Acad. Sci. U.S.A. 76, 2551–2555 (1979).

    Article  ADS  CAS  Google Scholar 

  45. Mauguen, Y. et al. Nature 297, 162–164 (1982).

    Article  ADS  CAS  Google Scholar 

  46. Ohgi, K. et al. J. Biochem., Tokyo 90, 113–123 (1981).

    Article  CAS  Google Scholar 

  47. Ikehara, M. & Imura, J. Chem. pharm. Bull. 29, 2408–2412 (1981).

    Article  CAS  Google Scholar 

  48. Fülling, R. thesis, Univ. Münster (1980).

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Heinemann, U., Saenger, W. Specific protein-nucleic acid recognition in ribonuclease T1–2′-guanylic acid complex: an X-ray study. Nature 299, 27–31 (1982). https://doi.org/10.1038/299027a0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/299027a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing