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NMR evidence for tertiary structure base pair in E. coli tRNA involving S4U8

Abstract

IN previous nuclear magnetic resonance (NMR) studies of tRNA we observed anomalously low field resonances (14.5–15.0 p.p.m. downfield from the usual standard 2,2-dimethylsilapentane-5-sulphonate (DSS)) in the spectra of many, but not all, Escherichia coli tRNA1–3 but yeast tRNA we examined never exhibited such resonances1,2. The fact that approximately 60% of the E.coli tRNA are class I and have a 4-thiouridine (S4U) residue at position 8 (refs 4 and 5), whereas yeast tRNA do not, raised the possibility that the anomalous low field resonances in E. coli tRNA might be due to ring NH protons of S4U8 in a tertiary structure base pair.

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References

  1. Kearns, D. R., Patel, D., Shulman, R. G., and Yamane, T., J. molec. Biol., 61, 265–270 (1971).

    Article  CAS  Google Scholar 

  2. Wong, Y. P., Kearns, D. R., Reid, B. R., and Shulman, R. G., J. molec. Biol., 72, 725–740 (1972).

    Article  CAS  Google Scholar 

  3. Shulman, R. G., Hilbers, C. W., Kearns, D. R., Reid, B. R., and Wong, Y. P., J. molec. Biol., 78, 56–69 (1973).

    Article  Google Scholar 

  4. Barrell, B. G., and Clark, B. F. C., Handbook of Nucleic Acid Sequences (Joynson-Bruvvers, Oxford, 1974).

    Google Scholar 

  5. Levitt, M., Nature, 224, 759–763 (1969).

    Article  ADS  CAS  Google Scholar 

  6. Katz, L., and Penman, S., J. molec. Biol., 15, 220–231 (1966).

    Article  CAS  Google Scholar 

  7. Pleiss, M., Ochiai, H., and Cerutti, P. A., Biochem. biophys. Res. Commun., 34, 70–76 (1969).

    Article  CAS  Google Scholar 

  8. Pleiss, M. G., and Cerutti, P. A., Biochemistry, 10, 3039–3099 (1971).

    Article  Google Scholar 

  9. Walker, R. T., and RajBhandary, U. L., Biochem. Biophys Res. Commun., 38, 907–914 (1970).

    Article  CAS  Google Scholar 

  10. Walker, R. T., and RajBhandary, U. L., J. biol. Chem., 247, 4879–4892 (1972).

    CAS  PubMed  Google Scholar 

  11. Favre, A., Michelson, A. M., and Yaniv, M., J. molec. Biol., 58, 367–379 (1971).

    Article  CAS  Google Scholar 

  12. Berthelot, F., Gros, F., and Favre, A., Eur. J. Biochem., 29, 343–347 (1972).

    Article  CAS  Google Scholar 

  13. Kim, S. H., et al., Science, 185, 435–440 (1974).

    Article  ADS  CAS  Google Scholar 

  14. Robertus, J. D., et al., Nature, 250, 546–551 (1974).

    Article  ADS  CAS  Google Scholar 

  15. Leonard, N. J., Bergstrom, D. E., and Tolman, G. L., Biochem. biophys. Res. Commun., 44, 1524–1530 (1971).

    Article  CAS  Google Scholar 

  16. Bergstrom, D. E., Inoue, I., and Leonard, N. J., J. org. Chem., 37, 3902–3905 (1972).

    Article  CAS  Google Scholar 

  17. Bergstrom, D. E., and Leonard, N. J., Biochemistry, 11, 1–9 (1972).

    Article  CAS  Google Scholar 

  18. Lightfoot, D. R., Wong, K. L., Kearns, D. R., Reid, B. R., and Shulman, R. G., J. molec. Biol., 78, 71–89 (1973).

    Article  CAS  Google Scholar 

  19. Jones, C. R., and Kearns, D. R., J. Am. chem. Soc., 96, 3651–3653 (1974).

    Article  CAS  Google Scholar 

  20. Wolfson, J. M., and Kearns, D. R., J. Am. chem. Soc., 96, 3653–3654 (1974).

    Article  CAS  Google Scholar 

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WONG, K., KEARNS, D. NMR evidence for tertiary structure base pair in E. coli tRNA involving S4U8. Nature 252, 738–739 (1974). https://doi.org/10.1038/252738a0

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