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Accelerated dissolution of diatom silica by marine bacterial assemblages


Downward fluxes of biogenic silica and organic matter in the global ocean derive dominantly from the productivity of diatoms — phytoplankton with cell walls containing silica encased in an organic matrix1,2. As diatoms have an absolute requirement for silicon (as silicic acid)3, its supply into the photic zone — largely by silica dissolution and upwelling — controls diatom production (and consequently the biological uptake of atmospheric CO2 by the ocean) over vast oceanic areas4. Current biogeochemical models assume silica dissolution to be controlled by temperature, zooplankton grazing and diatom aggregation4,5, but the role of bacteria has not been established. Yet bacteria utilize about half of the organic matter derived from oceanic primary production6 by varied strategies, including attack on dead and living diatoms by using hydrolytic enzymes7,8, and could adventitiously hasten silica dissolution by degrading the organic matrix which protects diatom frustules from dissolution9,10. Here we report the results of experiments in which natural assemblages of marine bacteria dramatically increased silica dissolution from two species of lysed marine diatoms compared to bacteria-free controls. Silica dissolution accompanied, and was caused by, bacterial colonization and hydrolytic attack. Bacteria-mediated silicon regeneration rates varied with diatom type and bacterial assemblage; observed rates could explain most of the reported upper-ocean silicon regeneration5,11. Bacteria-mediated silicon regeneration may thus critically control diatom productivity and the cycling and fate of silicon and carbon in the ocean.

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Figure 1: Bacterial colonization and silicon regeneration of diatoms lysed by freeze-thaw.
Figure 2: Pronase E digestion of C. fusiformis or T. weissflogii detritus.


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We thank D. C. Smith, M. Hildebrand, M. A. Brzezinski, J. T. Hollibaugh and K. A. Bidle for discussions and suggestions. This work was supported by NSF grants to F.A.

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Correspondence to Farooq Azam.

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Bidle, K., Azam, F. Accelerated dissolution of diatom silica by marine bacterial assemblages. Nature 397, 508–512 (1999).

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