Table 2 ARE sequences identified in the ARBSs detected by ENCODE chip

From: Identification of novel androgen response genes in prostate cancer cells by coupling chromatin immunoprecipitation and genomic microarray analysis

ARBS no. Gene Distance from TSS (bp) Position Chromosome Genomic location Strand ARE sequence
1 UGT1A1 −17 422 5′ 2 234433576 +1 TGAACAttcTGTCCT
2 PGC −399 5′ 6 41823498 +1 GGAACAaatAGTTCT
3 SCAP2 −130 006 5′ 7 26807587 −1 AGAACCccaGGACCC
4 STEAP2 15 941 INTRON 3 7 89501592 +1 GGAAAGaatTGTTCT
5 PFTK1 −2978 5′ 7 89980382 −1 AGTAAGaagAGTTGC *
   −2947 5′ 7 89980415 −1 ACAGCActcAGTACT *
6 TES +106 870 3′ 7 115551402 +1 AAAACActcAGTTGC *
7 MET +116 298 INTRON 17 7 116022708 +1 TGCACAgtgTTTTAC*
8 KIAA0377 +27 774 INTRON 27 15 41640739 −1 TAACCAtccTGTACC
9 CATSPER2 −11 955 5′ 15 41740290 −1 TAACCAtccTGTACC
10 CDH2 +20 827 INTRON1 18 23990362 −1 GGTACAgaaTGTCAC
   +20 805 INTRON1 18 23990384 −1 GGTACAgaaTGTCAC
   +20 761 INTRON1 18 23990428 −1 GGTACAgcaTGTCAC
   +20 739 INTRON1 18 23990450 −1 GGTACAgaaTGTCAC
   +20 695 INTRON1 18 23990494 −1 GGTACAgcaTGTCAC
   +20 673 INTRON1 18 23990516 −1 GGTACAgcaTGTCAC
   +20 651 INTRON1 18 23990538 −1 GGTACAgaaTGTCAC
   +20 629 INTRON1 18 23990560 −1 GGTACAgcaTGTCAC
   +20 607 INTRON1 18 23990582 −1 GGTACAgcaTGTCAC
   +20 541 INTRON1 18 23990648 −1 GGTACAgcaTGTCAC
   +20 519 INTRON1 18 23990670 −1 GGTACAgcaTGTCAC
   +20 651 INTRON1 18 23990538 −1 GGTACAgaaTGTCAC
   +20 453 INTRON1 18 23990736 −1 GGTACAgaaTGTCAC
  1. ARE sequences were primarily determined by a position-weighted matrix method TRANSFAC with the matrix conservation >75% (Matys et al., 2003). If no ARE was predicted by the first criteria, alternative ARE sequences (indicated as *) were determined by a sequence analysis utility of JASPER with the relative profile score threshold >70% (Sandelin et al., 2004). Genomic location of ARE sequence indicates the position of the center base.