Table 1 List of candidate BOA genes within MRIII, identified by NIX and TAP

From: Physical and transcript map of the minimally deleted region III on 17p implicated in the early development of Barrett's oesophageal adenocarcinoma

  Position (kb) Prediction method Gene/EST Size of gene/EST No. of exons
  D17S1852 (limit)     
1 1.2 (F and R) NIX EST 466 bp  
2 3–3.8 (R) TAP Gene 825 bp 1
   NIX EST   
3 13.2–13.7 (R) TAP Gene 450 bp 1
   NIX EST   
4 4.4–30.74 (F) NIX MYH3 26 kb 36
  6.85–20 (F) TAP MYH3 13.15 kb 16
  6.5–13.9 (F) TAP MYH3 (ALT) 7 kb 4
5 31.2–32.47 (F) TAP Gene 1.3 kb 2
6 34.73 (F and R) NIX EST 300 bp  
7 37.45 (R) NIX EST 333 bp  
8 48.7–54.7 (F) TAP Gene 6 kb 2
   NIX 4 ESTs   
9 56.7–63 (F) TAP Gene 6.3 kb 2
  57–57.6 (F) TAP Gene (ALT) 0.6 kb 2
   NIX 2 ESTs   
10 67.4–73.1 (F) NIX SCO1 5.7 kb 4
  67.2–73 (F) TAP SCO1 5.7 kb 4
11 80.24–80.88 (F) TAP Gene 640 bp 1
12 79.7–86.01 (R) NIX x006 6.31 kb 7
  73–81.9 (R) TAP x006 8.9 kb 3
  80.64–81.9 (R) TAP x006 (ALT) 1.69 kb 2
13 86.5–86.57 (F) TAP Gene 75 bp 1
  87.34(F) NIX EST 200 bp  
14 88.69–89.9 (F) TAP Gene 1.31 kb 1
  89.7 (F) NIX 2 ESTs 650 bp  
15 90.35–105.11 (F) NIX MAGOH-LIKE 14.76 kb 9
   TAP MAGOH-LIKE 10.875 kb 4
  90.9–101.74 (F) TAP MAGOH-LIKE 9.6 kb 4
  90.9–100.5 (F)   (ALT)   
16 106 (R) NIX 2 ESTs 465 bp  
17 107 (F) NIX EST 325 bp  
18 116.9–117.35 (F) TAP Gene 450 bp 1
   NIX EST 270 bp  
  117.2 (R)     
19 136.09 (F) NIX EST 333 bp  
20 209.24–223.87 (F and R) NIX Gene with 3 ESTs 14.6 kb 8
21 245.15 (F and R) NIX EST 399 bp  
22 247.15 (F) NIX EST 195 bp  
23 260.6 (F) NIX EST 195 bp  
24 265.4 (F) NIX EST 399 bp  
25 269.9 (F) NIX EST 333 bp  
  D17S954 (limit)     
  1. The sequence position (kb) from the microsatellite marker D17S1852, and the DNA strand containing the predicted gene (F, forward; R, reverse) is indicated. NIX and TAP predictions are based on the HGP sequence database information as at January 2002